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kirre kin of irre [ Drosophila pseudoobscura ]

Gene ID: 4814983, updated on 23-May-2024

Summary

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Gene symbol
kirre
Gene description
kin of irre
See related
EnsemblRapid:LOC4814983
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila pseudoobscura
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Orthologs
fruit fly all
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Genomic context

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See kirre in Genome Data Viewer
Location:
chromosome: X
Exon count:
9
Annotation release Status Assembly Chr Location
104 current UCI_Dpse_MV25 (GCF_009870125.1) X NC_046683.1 (15723222..15770184, complement)

Chromosome X - NC_046683.1Genomic Context describing neighboring genes Neighboring gene UPF0729 protein GD16342 Neighboring gene neurogenic locus Notch protein Neighboring gene uncharacterized LOC26532201 Neighboring gene hepatoma-derived growth factor-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046683.1 Chromosome X Reference UCI_Dpse_MV25 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Estimating the parameters of selection on nonsynonymous mutations in Drosophila pseudoobscura and D. miranda. Haddrill PR, et al. Genetics, 2010 Aug. PMID 20516497, Free PMC Article
  2. Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura. Palmieri N, et al. PLoS One, 2012. PMID 23056304, Free PMC Article
  3. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
irregular chiasm C-roughest protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila pseudoobscura Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_Dpse_MV25 Primary Assembly

Genomic

  1. NC_046683.1 Reference UCI_Dpse_MV25 Primary Assembly

    Range
    15723222..15770184 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033381469.1 → XP_033237360.1  irregular chiasm C-roughest protein isoform X1

    UniProtKB/TrEMBL
    A0A6I8W1Y2
    Related
    XP_033237360.1, XM_033381469.1
    Conserved Domains (5) summary
    smart00410
    Location:97 → 191
    IG_like; Immunoglobulin like
    pfam08205
    Location:198 → 288
    C2-set_2; CD80-like C2-set immunoglobulin domain
    pfam13927
    Location:391 → 456
    Ig_3; Immunoglobulin domain
    cd00096
    Location:198 → 201
    Ig; Ig strand A [structural motif]
    cl11960
    Location:475 → 570
    Ig; Immunoglobulin domain

  2. XM_015186057.2 → XP_015041543.1  irregular chiasm C-roughest protein isoform X2

    UniProtKB/TrEMBL
    A0A0R3P510, A0A6I8VHK2
    Related
    XP_015041543.1, XM_015186057.2
    Conserved Domains (5) summary
    smart00408
    Location:385 → 436
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:377 → 451
    IG_like; Immunoglobulin like
    pfam08205
    Location:178 → 268
    C2-set_2; CD80-like C2-set immunoglobulin domain
    pfam13927
    Location:279 → 354
    Ig_3; Immunoglobulin domain
    cl11960
    Location:455 → 549
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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