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SWIP strumpellin and WASH-interacting protein [ Drosophila pseudoobscura ]

Gene ID: 4814898, updated on 23-May-2024

Summary

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Gene symbol
SWIP
Gene description
strumpellin and WASH-interacting protein
See related
EnsemblRapid:LOC4814898
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila pseudoobscura
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Orthologs
fruit fly all
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Genomic context

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See SWIP in Genome Data Viewer
Location:
chromosome: X
Exon count:
8
Annotation release Status Assembly Chr Location
104 current UCI_Dpse_MV25 (GCF_009870125.1) X NC_046683.1 (7544186..7548155, complement)

Chromosome X - NC_046683.1Genomic Context describing neighboring genes Neighboring gene myotubularin-related protein 4 Neighboring gene peptidyl-prolyl cis-trans isomerase Neighboring gene protein IWS1 homolog Neighboring gene zinc finger protein on ecdysone puffs-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046683.1 Chromosome X Reference UCI_Dpse_MV25 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of WASH complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WASH complex subunit 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila pseudoobscura Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_Dpse_MV25 Primary Assembly

Genomic

  1. NC_046683.1 Reference UCI_Dpse_MV25 Primary Assembly

    Range
    7544186..7548155 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001355074.4 → XP_001355110.3  WASH complex subunit 4 isoform X1

    UniProtKB/TrEMBL
    A0A6I8UGH2
    Related
    XP_001355110.3, XM_001355074.4
    Conserved Domains (3) summary
    pfam14744
    Location:650 → 924
    WASH-7_mid; WASH complex subunit 7
    pfam14745
    Location:20 → 586
    WASH-7_N; WASH complex subunit 7, N-terminal
    pfam14746
    Location:938 → 1109
    WASH-7_C; WASH complex subunit 7, C-terminal

  2. XM_015186591.2 → XP_015042077.2  WASH complex subunit 4 isoform X2

    UniProtKB/TrEMBL
    A0A6I8VIH1
    Related
    XP_015042077.2, XM_015186591.2
    Conserved Domains (1) summary
    pfam14745
    Location:20 → 586
    WASH-7_N; WASH complex subunit 7, N-terminal
Nucleotide Protein Strain
Heading Accession and Version

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