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CLEC4F C-type lectin domain family 4 member F [ Canis lupus familiaris (dog) ]

Gene ID: 481424, updated on 17-Aug-2024

Summary

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Official Symbol
CLEC4Fprovided by VGNC
Official Full Name
C-type lectin domain family 4 member Fprovided by VGNC
Primary source
VGNC:VGNC:39332
See related
Ensembl:ENSCAFG00845028037
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See CLEC4F in Genome Data Viewer
Location:
chromosome: 10
Exon count:
7
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 10 NC_051814.1 (70192860..70202052, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 10 NC_006592.4 (69057978..69067000, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 10 NC_049231.1 (70472208..70481400, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 10 NC_049270.1 (69911411..69920436, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 10 NC_049751.1 (70172783..70181815, complement)

Chromosome 10 - NC_051814.1Genomic Context describing neighboring genes Neighboring gene adducin 2 Neighboring gene folliculogenesis specific bHLH transcription factor Neighboring gene CD207 molecule Neighboring gene ventral anterior homeobox 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C-type lectin domain family 4 member F

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051814.1 Reference ROS_Cfam_1.0

    Range
    70192860..70202052 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038678873.1 → XP_038534801.1  C-type lectin domain family 4 member F isoform X1

    UniProtKB/TrEMBL
    A0A8C0QJC4, A0A8C0RPV2, A0A8I3Q482
    Related
    ENSCAFP00845038831.1, ENSCAFT00845049494.1
    Conserved Domains (2) summary
    cd03590
    Location:492 → 616
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
    COG1196
    Location:139 → 486
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049270.1 Alternate UMICH_Zoey_3.1

    Range
    69911411..69920436 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038489649.1 → XP_038345577.1  C-type lectin domain family 4 member F isoform X1

  2. XM_038489650.1 → XP_038345578.1  C-type lectin domain family 4 member F isoform X2

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049751.1 Alternate UNSW_CanFamBas_1.0

    Range
    70172783..70181815 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038613497.1 → XP_038469425.1  C-type lectin domain family 4 member F isoform X1

  2. XM_038613498.1 → XP_038469426.1  C-type lectin domain family 4 member F isoform X3

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049231.1 Alternate UU_Cfam_GSD_1.0

    Range
    70472208..70481400 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038549550.1 → XP_038405478.1  C-type lectin domain family 4 member F isoform X1

    UniProtKB/TrEMBL
    A0A8C0QJC4, A0A8C0RPV2, A0A8I3Q482
    Conserved Domains (2) summary
    cd03590
    Location:492 → 616
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
    COG1196
    Location:139 → 486
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006592.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    69057978..69067000 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038641243.1 → XP_038497171.1  C-type lectin domain family 4 member F isoform X1

    UniProtKB/TrEMBL
    A0A8C0QJC4, A0A8C0RPV2, A0A8P0S973
    Conserved Domains (2) summary
    cd03590
    Location:492 → 616
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
    COG1196
    Location:191 → 488
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein
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