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SLC1A4 solute carrier family 1 member 4 [ Canis lupus familiaris (dog) ]

Gene ID: 481391, updated on 17-Aug-2024

Summary

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Official Symbol
SLC1A4provided by VGNC
Official Full Name
solute carrier family 1 member 4provided by VGNC
Primary source
VGNC:VGNC:46264
See related
Ensembl:ENSCAFG00845020925
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
ASCT1
Orthologs
human mouse all
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Genomic context

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See SLC1A4 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
8
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 10 NC_051814.1 (65493157..65518318)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 10 NC_006592.4 (64369739..64394932)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 10 NC_049231.1 (65774013..65799174)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 10 NC_049270.1 (65172083..65197216)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 10 NC_049751.1 (65480918..65503851)

Chromosome 10 - NC_051814.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119873782 Neighboring gene uncharacterized LOC111097786 Neighboring gene uncharacterized LOC119873699 Neighboring gene U1 small nuclear ribonucleoprotein C-like Neighboring gene centrosomal protein 68

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Canine ASCT1 and ASCT2 are functional receptors for RD-114 virus in dogs. Yoshikawa R, et al. J Gen Virol, 2012 Mar. PMID 22131312
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-alanine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables L-aspartate transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables L-serine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables L-threonine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-glutamate transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in L-serine transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neutral amino acid transporter A
Names
alanine/serine/cysteine/threonine transporter 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051814.1 Reference ROS_Cfam_1.0

    Range
    65493157..65518318
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038680770.1 → XP_038536698.1  neutral amino acid transporter A

    UniProtKB/TrEMBL
    A0A8C0LN80, A0A8I3S220
    Related
    ENSCAFP00845028925.1, ENSCAFT00845036942.1
    Conserved Domains (1) summary
    pfam00375
    Location:69 → 474
    SDF; Sodium:dicarboxylate symporter family

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049270.1 Alternate UMICH_Zoey_3.1

    Range
    65172083..65197216
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038489460.1 → XP_038345388.1  neutral amino acid transporter A

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049751.1 Alternate UNSW_CanFamBas_1.0

    Range
    65480918..65503851
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038615383.1 → XP_038471311.1  neutral amino acid transporter A

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049231.1 Alternate UU_Cfam_GSD_1.0

    Range
    65774013..65799174
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038551449.1 → XP_038407377.1  neutral amino acid transporter A

    UniProtKB/TrEMBL
    A0A8C0LN80, A0A8C0Q4G4, A0A8P0S969

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006592.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    64369739..64394932
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_538511.7 → XP_538511.4  neutral amino acid transporter A

    UniProtKB/TrEMBL
    A0A8C0LN80, A0A8C0Q4G4, A0A8P0S969
    Conserved Domains (1) summary
    pfam00375
    Location:69 → 474
    SDF; Sodium:dicarboxylate symporter family
Nucleotide Protein
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