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RDH5 retinol dehydrogenase 5 [ Canis lupus familiaris (dog) ]

Gene ID: 481098, updated on 17-Aug-2024

Summary

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Official Symbol
RDH5provided by VGNC
Official Full Name
retinol dehydrogenase 5provided by VGNC
Primary source
VGNC:VGNC:45454
See related
Ensembl:ENSCAFG00845005441
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See RDH5 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 10 NC_051814.1 (127659..132829)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 10 NC_006592.4 (182788..187948)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 10 NC_049231.1 (472362..477524)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 10 NC_049270.1 (105355..110512)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 10 NC_049751.1 (348472..353628)

Chromosome 10 - NC_051814.1Genomic Context describing neighboring genes Neighboring gene thiol methyltransferase 1B Neighboring gene integrin subunit alpha 7 Neighboring gene biogenesis of lysosomal organelles complex 1 subunit 1 Neighboring gene CD63 molecule Neighboring gene growth differentiation factor 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
11-cis retinol dehydrogenase; retinol dehydrogenase 5
Names
biogenesis of lysosome-related organelles complex-1, subunit 1
retinol dehydrogenase 5 (11-cis/9-cis)
XP_038343620.1
XP_038343621.1
XP_038343622.1
XP_038405508.1
XP_038405509.1
XP_038405510.1
XP_038469480.1
XP_038469481.1
XP_038469482.1
XP_038494991.1
XP_038495000.1
XP_038495011.1
XP_038534842.1
XP_038534843.1
XP_038534844.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051814.1 Reference ROS_Cfam_1.0

    Range
    127659..132829
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038678914.1 → XP_038534842.1  retinol dehydrogenase 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LRK9, A0A8I3MTG2, A0A8P0N389
    Related
    ENSCAFP00845007585.1, ENSCAFT00845009701.1
    Conserved Domains (1) summary
    cd09805
    Location:84 → 360
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

  2. XM_038678915.1 → XP_038534843.1  retinol dehydrogenase 5 isoform X2

    UniProtKB/TrEMBL
    A0A8C0QE71
    Conserved Domains (1) summary
    cd09805
    Location:30 → 306
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

  3. XM_038678916.1 → XP_038534844.1  retinol dehydrogenase 5 isoform X2

    UniProtKB/TrEMBL
    A0A8C0QE71
    Conserved Domains (1) summary
    cd09805
    Location:30 → 306
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049270.1 Alternate UMICH_Zoey_3.1

    Range
    105355..110512
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038487692.1 → XP_038343620.1  retinol dehydrogenase 5 isoform X1

    Conserved Domains (1) summary
    cd09805
    Location:84 → 360
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

  2. XM_038487693.1 → XP_038343621.1  retinol dehydrogenase 5 isoform X2

    Conserved Domains (1) summary
    cd09805
    Location:30 → 306
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

  3. XM_038487694.1 → XP_038343622.1  retinol dehydrogenase 5 isoform X2

    Conserved Domains (1) summary
    cd09805
    Location:30 → 306
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049751.1 Alternate UNSW_CanFamBas_1.0

    Range
    348472..353628
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038613552.1 → XP_038469480.1  retinol dehydrogenase 5 isoform X1

    Conserved Domains (1) summary
    cd09805
    Location:84 → 360
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

  2. XM_038613553.1 → XP_038469481.1  retinol dehydrogenase 5 isoform X2

    Conserved Domains (1) summary
    cd09805
    Location:30 → 306
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

  3. XM_038613554.1 → XP_038469482.1  retinol dehydrogenase 5 isoform X2

    Conserved Domains (1) summary
    cd09805
    Location:30 → 306
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049231.1 Alternate UU_Cfam_GSD_1.0

    Range
    472362..477524
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038549580.1 → XP_038405508.1  retinol dehydrogenase 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LRK9, A0A8I3MTG2, A0A8P0N389
    Conserved Domains (1) summary
    cd09805
    Location:84 → 360
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

  2. XM_038549581.1 → XP_038405509.1  retinol dehydrogenase 5 isoform X2

    UniProtKB/TrEMBL
    A0A8C0QE71
    Conserved Domains (1) summary
    cd09805
    Location:30 → 306
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

  3. XM_038549582.1 → XP_038405510.1  retinol dehydrogenase 5 isoform X2

    UniProtKB/TrEMBL
    A0A8C0QE71
    Conserved Domains (1) summary
    cd09805
    Location:30 → 306
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006592.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    182788..187948
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038639063.1 → XP_038494991.1  retinol dehydrogenase 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LRK9, A0A8I3MTG2, A0A8P0N389
    Conserved Domains (1) summary
    cd09805
    Location:84 → 360
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

  2. XM_038639072.1 → XP_038495000.1  retinol dehydrogenase 5 isoform X2

    UniProtKB/TrEMBL
    A0A8C0QE71
    Conserved Domains (1) summary
    cd09805
    Location:30 → 306
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

  3. XM_038639083.1 → XP_038495011.1  retinol dehydrogenase 5 isoform X2

    UniProtKB/TrEMBL
    A0A8C0QE71
    Conserved Domains (1) summary
    cd09805
    Location:30 → 306
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs
Nucleotide Protein
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