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ATG4A autophagy related 4A cysteine peptidase [ Canis lupus familiaris (dog) ]

Gene ID: 481015, updated on 17-Aug-2024

Summary

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Official Symbol
ATG4Aprovided by VGNC
Official Full Name
autophagy related 4A cysteine peptidaseprovided by VGNC
Primary source
VGNC:VGNC:38223
See related
Ensembl:ENSCAFG00845018999
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See ATG4A in Genome Data Viewer
Location:
chromosome: X
Exon count:
13
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) X NC_051843.1 (83281769..83337418)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) X NC_006621.4 (67753046..67808661)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) X NC_049260.1 (82244510..82299838)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) X NC_049299.1 (80740818..80796428)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) X NC_049780.1 (82453368..82509012)

Chromosome X - NC_051843.1Genomic Context describing neighboring genes Neighboring gene V-set and immunoglobulin domain containing 1 Neighboring gene proteasome 26S subunit, non-ATPase 10 Neighboring gene collagen type IV alpha 6 chain Neighboring gene protein BEX4-like Neighboring gene collagen type IV alpha 5 chain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-phosphatidylethanolamide deconjugating activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cysteine protease ATG4A
Names
ATG4 autophagy related 4 homolog A
XP_038306541.1
XP_038379994.1
XP_038443971.1
XP_038508487.1
XP_538136.5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051843.1 Reference ROS_Cfam_1.0

    Range
    83281769..83337418
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038450613.1 → XP_038306541.1  cysteine protease ATG4A

    UniProtKB/TrEMBL
    A0A8C0K0S9, A0A8C0TML5
    Related
    ENSCAFP00845026258.1, ENSCAFT00845033541.1
    Conserved Domains (1) summary
    pfam03416
    Location:42 → 335
    Peptidase_C54; Peptidase family C54

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049299.1 Alternate UMICH_Zoey_3.1

    Range
    80740818..80796428
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038524066.1 → XP_038379994.1  cysteine protease ATG4A

    Conserved Domains (1) summary
    pfam03416
    Location:42 → 335
    Peptidase_C54; Peptidase family C54

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049780.1 Alternate UNSW_CanFamBas_1.0

    Range
    82453368..82509012
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038652559.1 → XP_038508487.1  cysteine protease ATG4A

    Conserved Domains (1) summary
    pfam03416
    Location:42 → 335
    Peptidase_C54; Peptidase family C54

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049260.1 Alternate UU_Cfam_GSD_1.0

    Range
    82244510..82299838
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038588043.1 → XP_038443971.1  cysteine protease ATG4A

    UniProtKB/TrEMBL
    A0A8C0K0S9, A0A8C0TML5
    Conserved Domains (1) summary
    pfam03416
    Location:42 → 335
    Peptidase_C54; Peptidase family C54

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006621.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    67753046..67808661
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_538136.7 → XP_538136.5  cysteine protease ATG4A

    UniProtKB/TrEMBL
    A0A8C0K0S9, A0A8C0TML5
    Conserved Domains (1) summary
    pfam03416
    Location:42 → 335
    Peptidase_C54; Peptidase family C54
Nucleotide Protein
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