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SDF2 stromal cell derived factor 2 [ Canis lupus familiaris (dog) ]

Gene ID: 480626, updated on 17-Aug-2024

Summary

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Official Symbol
SDF2provided by VGNC
Official Full Name
stromal cell derived factor 2provided by VGNC
Primary source
VGNC:VGNC:45947
See related
Ensembl:ENSCAFG00845008374
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See SDF2 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (43667969..43677493, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (42005835..42015335, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (42821435..42830931, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (42451447..42460936, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (42743661..42753178, complement)

Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102154115 Neighboring gene KIAA0100 Neighboring gene ribosomal protein S6 kinase related Neighboring gene SPT6 homolog, histone chaperone and transcription elongation factor Neighboring gene protein interacting with cyclin A1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
stromal cell-derived factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051813.1 Reference ROS_Cfam_1.0

    Range
    43667969..43677493 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038677488.1 → XP_038533416.1  stromal cell-derived factor 2

    UniProtKB/TrEMBL
    A0A8C0KG43, A0A8C0TCD6, A0A8I3N8S3
    Related
    ENSCAFP00845011437.1, ENSCAFT00845014758.1
    Conserved Domains (1) summary
    COG1928
    Location:14 → 188
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049269.1 Alternate UMICH_Zoey_3.1

    Range
    42451447..42460936 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038486425.1 → XP_038342353.1  stromal cell-derived factor 2

    Conserved Domains (1) summary
    COG1928
    Location:14 → 188
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

    Range
    42743661..42753178 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038612228.1 → XP_038468156.1  stromal cell-derived factor 2

    Conserved Domains (1) summary
    COG1928
    Location:14 → 188
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

    Range
    42821435..42830931 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038548265.1 → XP_038404193.1  stromal cell-derived factor 2

    UniProtKB/TrEMBL
    A0A8C0KG43, A0A8C0TCD6, A0A8I3N8S3
    Conserved Domains (1) summary
    COG1928
    Location:14 → 188
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    42005835..42015335 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_537746.6 → XP_537746.2  stromal cell-derived factor 2

    UniProtKB/TrEMBL
    A0A8C0KG43, A0A8C0TCD6, A0A8I3N8S3
    Conserved Domains (1) summary
    COG1928
    Location:14 → 188
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
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