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Gyg glycogenin 1 [ Drosophila pseudoobscura ]

Gene ID: 4803761, updated on 8-Oct-2024

Summary

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Gene symbol
Gyg
Gene description
glycogenin 1
See related
EnsemblRapid:LOC4803761
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila pseudoobscura
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Orthologs
fruit fly all
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Genomic context

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See Gyg in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCI_Dpse_MV25 (GCF_009870125.1) 3 NC_046680.1 (7270889..7281544)

Chromosome 3 - NC_046680.1Genomic Context describing neighboring genes Neighboring gene maternal protein tudor Neighboring gene Leucine-rich repeat activity-regulated protein at synapses Neighboring gene uncharacterized LOC117183546 Neighboring gene FK506-binding protein 5 Neighboring gene UDP-glycosyltransferase family 49 member B1 Neighboring gene UDP-glycosyltransferase family 49 member C1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046680.1 Chromosome 3 Reference UCI_Dpse_MV25 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura. Palmieri N, et al. PLoS One, 2012. PMID 23056304, Free PMC Article
  2. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycogenin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila pseudoobscura Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_Dpse_MV25 Primary Assembly

Genomic

  1. NC_046680.1 Reference UCI_Dpse_MV25 Primary Assembly

    Range
    7270889..7281544
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015183850.2 → XP_015039336.2  glycogenin-1

    UniProtKB/TrEMBL
    A0A6I8VE32
    Related
    XP_015039336.2, XM_015183850.2
    Conserved Domains (1) summary
    cd02537
    Location:4 → 253
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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