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CHML CHM like Rab escort protein [ Canis lupus familiaris (dog) ]

Gene ID: 480094, updated on 5-Mar-2024

Summary

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Gene symbol
CHML
Gene description
CHM like Rab escort protein
See related
Ensembl:ENSCAFG00845004391
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See CHML in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 7 NC_051811.1 (32853744..32862999, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 7 NC_006589.4 (32504522..32513774, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 7 NC_049228.1 (32960620..32969892, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 7 NC_049267.1 (32688279..32697533, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 7 NC_049748.1 (32712648..32721906, complement)

Chromosome 7 - NC_051811.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106559037 Neighboring gene fumarate hydratase Neighboring gene kynurenine 3-monooxygenase Neighboring gene opsin 3 Neighboring gene WD repeat domain 64 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC111096683

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GDP-dissociation inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein geranylgeranylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in small GTPase-mediated signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Rab-protein geranylgeranyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rab proteins geranylgeranyltransferase component A 2
Names
CHM like Rab escort protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051811.1 Reference ROS_Cfam_1.0

    Range
    32853744..32862999 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038671507.1 → XP_038527435.1  rab proteins geranylgeranyltransferase component A 2

    UniProtKB/TrEMBL
    A0A8I3MQ21
    Related
    ENSCAFP00845006231.1, ENSCAFT00845007885.1
    Conserved Domains (1) summary
    cl21454
    Location:6 → 542
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

RNA

  1. XR_005429883.1 RNA Sequence

  2. XR_005429884.1 RNA Sequence

  3. XR_005429885.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049267.1 Alternate UMICH_Zoey_3.1

    Range
    32688279..32697533 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038481325.1 → XP_038337253.1  rab proteins geranylgeranyltransferase component A 2

    Conserved Domains (1) summary
    cl21454
    Location:6 → 542
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

RNA

  1. XR_005328327.1 RNA Sequence

  2. XR_005328328.1 RNA Sequence

  3. XR_005328329.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049748.1 Alternate UNSW_CanFamBas_1.0

    Range
    32712648..32721906 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038606829.1 → XP_038462757.1  rab proteins geranylgeranyltransferase component A 2

    Conserved Domains (1) summary
    cl21454
    Location:6 → 542
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

RNA

  1. XR_005396679.1 RNA Sequence

  2. XR_005396680.1 RNA Sequence

  3. XR_005396681.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049228.1 Alternate UU_Cfam_GSD_1.0

    Range
    32960620..32969892 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038542682.1 → XP_038398610.1  rab proteins geranylgeranyltransferase component A 2

    UniProtKB/TrEMBL
    A0A8I3MQ21
    Conserved Domains (1) summary
    cl21454
    Location:6 → 542
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

RNA

  1. XR_005362177.1 RNA Sequence

  2. XR_005362178.1 RNA Sequence

  3. XR_005362179.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006589.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    32504522..32513774 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038568104.1 → XP_038424032.1  rab proteins geranylgeranyltransferase component A 2

    UniProtKB/TrEMBL
    A0A8P0TMF6
    Conserved Domains (1) summary
    cl21454
    Location:6 → 542
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

RNA

  1. XR_005375307.1 RNA Sequence

  2. XR_005375312.1 RNA Sequence

  3. XR_005375322.1 RNA Sequence

Nucleotide Protein
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