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NIP7 nucleolar pre-rRNA processing protein NIP7 [ Canis lupus familiaris (dog) ]

Gene ID: 479673, updated on 17-Aug-2024

Summary

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Official Symbol
NIP7provided by VGNC
Official Full Name
nucleolar pre-rRNA processing protein NIP7provided by VGNC
Primary source
VGNC:VGNC:43814
See related
Ensembl:ENSCAFG00845009683
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See NIP7 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (80721620..80750261, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (80304051..80306585, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (80897229..80899763, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (80574801..80577350, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (80257644..80260180, complement)

Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene cytochrome b5 type B (outer mitochondrial membrane) Neighboring gene uncharacterized LOC119872036 Neighboring gene transfer RNA serine (anticodon ACU) Neighboring gene telomeric repeat binding factor 2 Neighboring gene transmembrane p24 trafficking protein 6 Neighboring gene component of oligomeric golgi complex 8 Neighboring gene vacuolar protein sorting 4 homolog A Neighboring gene syntrophin beta 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosomal large subunit biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of preribosome, large subunit precursor IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
60S ribosome subunit biogenesis protein NIP7 homolog
Names
NIP7, nucleolar pre-rRNA processing protein
nuclear import 7 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001287127.1 → NP_001274056.1  60S ribosome subunit biogenesis protein NIP7 homolog

    See identical proteins and their annotated locations for NP_001274056.1

    Status: VALIDATED

    Source sequence(s)
    CF410252, CX989012, DN271241, DN392511, DN754222
    UniProtKB/TrEMBL
    A0A8C0NAY9, A0A8I3N227
    Related
    ENSCAFP00845013303.1, ENSCAFT00845017083.1
    Conserved Domains (2) summary
    cd21146
    Location:2 → 88
    Nip7_N_euk; N-terminal domain of eukaryotic 60S ribosome subunit biogenesis protein Nip7 and similar proteins
    cd21151
    Location:95 → 172
    PUA_Nip7-like; PUA RNA binding domain of ribosome assembly factor Nip7 and similar proteins

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051809.1 Reference ROS_Cfam_1.0

    Range
    80721620..80750261 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038664124.1 → XP_038520052.1  60S ribosome subunit biogenesis protein NIP7 homolog isoform X1

    Conserved Domains (2) summary
    cd21146
    Location:2 → 88
    Nip7_N_euk; N-terminal domain of eukaryotic 60S ribosome subunit biogenesis protein Nip7 and similar proteins
    cd21151
    Location:95 → 141
    PUA_Nip7-like; PUA RNA binding domain of ribosome assembly factor Nip7 and similar proteins

  2. XM_038664125.1 → XP_038520053.1  60S ribosome subunit biogenesis protein NIP7 homolog isoform X2

    Conserved Domains (2) summary
    cd21146
    Location:2 → 88
    Nip7_N_euk; N-terminal domain of eukaryotic 60S ribosome subunit biogenesis protein Nip7 and similar proteins
    cd21151
    Location:95 → 141
    PUA_Nip7-like; PUA RNA binding domain of ribosome assembly factor Nip7 and similar proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049265.1 Alternate UMICH_Zoey_3.1

    Range
    80574801..80577350 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

    Range
    80257644..80260180 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

    Range
    80897229..80899763 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    80304051..80306585 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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