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TRAPPC4 trafficking protein particle complex subunit 4 [ Canis lupus familiaris (dog) ]

Gene ID: 479411, updated on 17-Aug-2024

Summary

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Official Symbol
TRAPPC4provided by VGNC
Official Full Name
trafficking protein particle complex subunit 4provided by VGNC
Primary source
VGNC:VGNC:47783
See related
Ensembl:ENSCAFG00845000973
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See TRAPPC4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (14773878..14776718, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (14883525..14886365, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (14856269..14859109, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (14912127..14914965, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (14815874..14818713, complement)

Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene hypoxia up-regulated 1 Neighboring gene translation initiation factor IF-2-like Neighboring gene solute carrier family 37 member 4 Neighboring gene ribosomal protein S25 Neighboring gene centrosomal AT-AC splicing factor Neighboring gene forkhead box R1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of TRAPP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trafficking protein particle complex subunit 4
Names
trafficking protein particle complex 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051809.1 Reference ROS_Cfam_1.0

    Range
    14773878..14776718 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038664693.1 → XP_038520621.1  trafficking protein particle complex subunit 4

    UniProtKB/TrEMBL
    A0A8C0KGA8, A0A8C0KKP9, A0A8C0M9N5, A0A8I3MJ74
    Related
    ENSCAFP00845001309.1, ENSCAFT00845001657.1
    Conserved Domains (1) summary
    cd14856
    Location:4 → 205
    TRAPPC4_synbindin; Trafficking protein particle complex subunit 4

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049265.1 Alternate UMICH_Zoey_3.1

    Range
    14912127..14914965 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038474815.1 → XP_038330743.1  trafficking protein particle complex subunit 4

    Conserved Domains (1) summary
    cd14856
    Location:4 → 205
    TRAPPC4_synbindin; Trafficking protein particle complex subunit 4

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

    Range
    14815874..14818713 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038600155.1 → XP_038456083.1  trafficking protein particle complex subunit 4

    Conserved Domains (1) summary
    cd14856
    Location:4 → 205
    TRAPPC4_synbindin; Trafficking protein particle complex subunit 4

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

    Range
    14856269..14859109 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038535961.1 → XP_038391889.1  trafficking protein particle complex subunit 4

    UniProtKB/TrEMBL
    A0A8C0KGA8, A0A8C0KKP9, A0A8C0M9N5, A0A8I3MJ74
    Conserved Domains (1) summary
    cd14856
    Location:4 → 205
    TRAPPC4_synbindin; Trafficking protein particle complex subunit 4

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    14883525..14886365 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_855163.6 → XP_860256.3  trafficking protein particle complex subunit 4

    UniProtKB/TrEMBL
    A0A8C0KGA8, A0A8C0KKP9, A0A8C0M9N5, A0A8I3MJ74
    Conserved Domains (1) summary
    cd14856
    Location:4 → 205
    TRAPPC4_synbindin; Trafficking protein particle complex subunit 4
Nucleotide Protein
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