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RPS23 ribosomal protein S23 [ Canis lupus familiaris (dog) ]

Gene ID: 479159, updated on 17-Aug-2024

Summary

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Official Symbol
RPS23provided by VGNC
Official Full Name
ribosomal protein S23provided by VGNC
Primary source
VGNC:VGNC:53238
See related
Ensembl:ENSCAFG00845020943
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See RPS23 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 3 NC_051807.1 (25121408..25123112)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 3 NC_006585.4 (26445283..26446964)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 3 NC_049224.1 (25324171..25325845)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 3 NC_049263.1 (25075589..25077271)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 3 NC_049744.1 (25043375..25045060)

Chromosome 3 - NC_051807.1Genomic Context describing neighboring genes Neighboring gene GTP-binding nuclear protein Ran-like Neighboring gene ATPase H+ transporting accessory protein 1 like Neighboring gene autophagy related 10 Neighboring gene transcription factor BTF3-like Neighboring gene uncharacterized LOC102156204

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
40S ribosomal protein S23

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051807.1 Reference ROS_Cfam_1.0

    Range
    25121408..25123112
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038660909.1 → XP_038516837.1  40S ribosomal protein S23

    UniProtKB/TrEMBL
    A0A8C0JQ03, A0A8C0Q1W3, A0A8I3S4N6
    Related
    ENSCAFP00845028985.1, ENSCAFT00845037016.1
    Conserved Domains (1) summary
    PTZ00067
    Location:1 → 143
    PTZ00067; 40S ribosomal S23; Provisional

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049263.1 Alternate UMICH_Zoey_3.1

    Range
    25075589..25077271
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038471488.1 → XP_038327416.1  40S ribosomal protein S23

    Conserved Domains (1) summary
    PTZ00067
    Location:1 → 143
    PTZ00067; 40S ribosomal S23; Provisional

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049744.1 Alternate UNSW_CanFamBas_1.0

    Range
    25043375..25045060
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038596702.1 → XP_038452630.1  40S ribosomal protein S23

    Conserved Domains (1) summary
    PTZ00067
    Location:1 → 143
    PTZ00067; 40S ribosomal S23; Provisional

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049224.1 Alternate UU_Cfam_GSD_1.0

    Range
    25324171..25325845
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038532417.1 → XP_038388345.1  40S ribosomal protein S23

    UniProtKB/TrEMBL
    A0A8C0JQ03, A0A8C0Q1W3, A0A8I3S4N6
    Conserved Domains (1) summary
    PTZ00067
    Location:1 → 143
    PTZ00067; 40S ribosomal S23; Provisional

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006585.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    26445283..26446964
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005618155.4 → XP_005618212.1  40S ribosomal protein S23

    See identical proteins and their annotated locations for XP_005618212.1

    UniProtKB/TrEMBL
    A0A8C0JQ03, A0A8C0Q1W3, A0A8I3S4N6
    Conserved Domains (1) summary
    PTZ00067
    Location:1 → 143
    PTZ00067; 40S ribosomal S23; Provisional
Nucleotide Protein
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