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NR2F2 nuclear receptor subfamily 2 group F member 2 [ Canis lupus familiaris (dog) ]

Gene ID: 479026, updated on 17-Aug-2024

Summary

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Official Symbol
NR2F2provided by VGNC
Official Full Name
nuclear receptor subfamily 2 group F member 2provided by VGNC
Primary source
VGNC:VGNC:43950
See related
Ensembl:ENSCAFG00845002076
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See NR2F2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 3 NC_051807.1 (44548234..44561807, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 3 NC_006585.4 (46838728..46852294, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 3 NC_049224.1 (44625819..44639411, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 3 NC_049263.1 (44070866..44084429, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 3 NC_049744.1 (44300713..44314268, complement)

Chromosome 3 - NC_051807.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111095367 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC111095204 Neighboring gene uncharacterized LOC111095205

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables retinoic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
COUP transcription factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051807.1 Reference ROS_Cfam_1.0

    Range
    44548234..44561807 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038661239.1 → XP_038517167.1  COUP transcription factor 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0L5S3, A0A8C0M0I2, A0A8C0TSN9, A0A8I3RRY5
    Related
    ENSCAFP00845002897.1, ENSCAFT00845003645.1
    Conserved Domains (1) summary
    cd06948
    Location:44 → 278
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

  2. XM_038661237.1 → XP_038517165.1  COUP transcription factor 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L519, A0A8C0R9D3, A0A8C0TP54, A0A8I3MKR4, A0A8I3RQE0
    Related
    ENSCAFP00845002906.1, ENSCAFT00845003657.1
    Conserved Domains (2) summary
    cd06948
    Location:177 → 411
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
    cd06958
    Location:79 → 151
    NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers

  3. XM_038661238.1 → XP_038517166.1  COUP transcription factor 2 isoform X2

    Conserved Domains (1) summary
    cd06948
    Location:91 → 325
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049263.1 Alternate UMICH_Zoey_3.1

    Range
    44070866..44084429 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038471807.1 → XP_038327735.1  COUP transcription factor 2 isoform X3

    Conserved Domains (1) summary
    cd06948
    Location:44 → 278
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

  2. XM_038471805.1 → XP_038327733.1  COUP transcription factor 2 isoform X1

    Conserved Domains (2) summary
    cd06948
    Location:177 → 411
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
    cd06958
    Location:79 → 151
    NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers

  3. XM_038471806.1 → XP_038327734.1  COUP transcription factor 2 isoform X2

    Conserved Domains (1) summary
    cd06948
    Location:91 → 325
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049744.1 Alternate UNSW_CanFamBas_1.0

    Range
    44300713..44314268 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038597045.1 → XP_038452973.1  COUP transcription factor 2 isoform X3

    Conserved Domains (1) summary
    cd06948
    Location:44 → 278
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

  2. XM_038597043.1 → XP_038452971.1  COUP transcription factor 2 isoform X1

    Conserved Domains (2) summary
    cd06948
    Location:177 → 411
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
    cd06958
    Location:79 → 151
    NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers

  3. XM_038597044.1 → XP_038452972.1  COUP transcription factor 2 isoform X2

    Conserved Domains (1) summary
    cd06948
    Location:91 → 325
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049224.1 Alternate UU_Cfam_GSD_1.0

    Range
    44625819..44639411 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038532728.1 → XP_038388656.1  COUP transcription factor 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0L5S3, A0A8C0M0I2, A0A8C0TSN9, A0A8I3RRY5
    Conserved Domains (1) summary
    cd06948
    Location:44 → 278
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

  2. XM_038532726.1 → XP_038388654.1  COUP transcription factor 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L519, A0A8C0R9D3, A0A8C0TP54, A0A8I3MKR4, A0A8I3RQE0
    Conserved Domains (2) summary
    cd06948
    Location:177 → 411
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
    cd06958
    Location:79 → 151
    NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers

  3. XM_038532727.1 → XP_038388655.1  COUP transcription factor 2 isoform X2

    Conserved Domains (1) summary
    cd06948
    Location:91 → 325
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006585.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    46838728..46852294 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_536178.7 → XP_536178.2  COUP transcription factor 2 isoform X3

    See identical proteins and their annotated locations for XP_536178.2

    UniProtKB/TrEMBL
    A0A8C0L5S3, A0A8C0M0I2, A0A8C0TSN9, A0A8I3RRY5
    Conserved Domains (1) summary
    cd06948
    Location:44 → 278
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

  2. XM_844404.7 → XP_849497.2  COUP transcription factor 2 isoform X1

    See identical proteins and their annotated locations for XP_849497.2

    UniProtKB/TrEMBL
    A0A8C0L519, A0A8C0R9D3, A0A8C0TP54, A0A8I3MKR4, A0A8I3RQE0
    Conserved Domains (2) summary
    cd06948
    Location:177 → 411
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
    cd06958
    Location:79 → 151
    NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers

  3. XM_038474150.1 → XP_038330078.1  COUP transcription factor 2 isoform X2

    Conserved Domains (1) summary
    cd06948
    Location:91 → 325
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
Nucleotide Protein
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