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GOLGB1 golgin B1 [ Canis lupus familiaris (dog) ]

Gene ID: 478581, updated on 17-Aug-2024

Summary

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Official Symbol
GOLGB1provided by VGNC
Official Full Name
golgin B1provided by VGNC
Primary source
VGNC:VGNC:41343
See related
Ensembl:ENSCAFG00845021329
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See GOLGB1 in Genome Data Viewer
Location:
chromosome: 33
Exon count:
24
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 33 NC_051837.1 (25170097..25260535, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 33 NC_006615.4 (24954942..25051736, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 33 NC_049254.1 (25567702..25658718, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 33 NC_049293.1 (24968315..25059017, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 33 NC_049774.1 (25010568..25101225, complement)

Chromosome 33 - NC_051837.1Genomic Context describing neighboring genes Neighboring gene F-box protein 40 Neighboring gene hematopoietic cell-specific Lyn substrate 1 Neighboring gene uncharacterized LOC111093727 Neighboring gene IQ motif containing B1 Neighboring gene ELL associated factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cis-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Golgin subfamily B member 1; golgin subfamily B member 1
Names
golgi autoantigen, golgin subfamily b, macrogolgin (with transmembrane signal), 1
golgin B1, golgi integral membrane protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051837.1 Reference ROS_Cfam_1.0

    Range
    25170097..25260535 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038445116.1 → XP_038301044.1  golgin subfamily B member 1 isoform X4

    UniProtKB/TrEMBL
    A0A8C0Z3P0
    Related
    ENSCAFP00845029826.1, ENSCAFT00845038069.1
    Conserved Domains (3) summary
    COG1196
    Location:1352 → 2129
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG4372
    Location:2748 → 3047
    COG4372; Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]
    TIGR02168
    Location:210 → 991
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. XM_038445115.1 → XP_038301043.1  golgin subfamily B member 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0TDE4
    Conserved Domains (3) summary
    COG1196
    Location:1387 → 2164
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG4372
    Location:2783 → 3082
    COG4372; Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]
    TIGR02168
    Location:214 → 1026
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  3. XM_038445114.1 → XP_038301042.1  golgin subfamily B member 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0TDE4
    Conserved Domains (3) summary
    COG1196
    Location:1388 → 2165
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG4372
    Location:2784 → 3083
    COG4372; Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]
    TIGR02168
    Location:335 → 1027
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  4. XM_038445117.1 → XP_038301045.1  golgin subfamily B member 1 isoform X5

    UniProtKB/TrEMBL
    A0A8C0TH25
    Related
    ENSCAFP00845030002.1, ENSCAFT00845038315.1
    Conserved Domains (2) summary
    COG1196
    Location:1393 → 2170
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:1853 → 2781
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  5. XM_038445110.1 → XP_038301038.1  golgin subfamily B member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0TDE4, A0A8I3P7Z4
    Conserved Domains (2) summary
    COG1196
    Location:1393 → 2170
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG4372
    Location:2789 → 3088
    COG4372; Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]

  6. XM_038445111.1 → XP_038301039.1  golgin subfamily B member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0TDE4, A0A8I3P7Z4
    Related
    ENSCAFP00845029660.1, ENSCAFT00845037854.1
    Conserved Domains (2) summary
    COG1196
    Location:1393 → 2170
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG4372
    Location:2789 → 3088
    COG4372; Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]

  7. XM_038445113.1 → XP_038301041.1  golgin subfamily B member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0TDE4, A0A8I3P7Z4
    Conserved Domains (2) summary
    COG1196
    Location:1393 → 2170
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG4372
    Location:2789 → 3088
    COG4372; Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]

  8. XM_038445118.1 → XP_038301046.1  golgin subfamily B member 1 isoform X6

    UniProtKB/TrEMBL
    A0A8C0MYV8
    Conserved Domains (1) summary
    COG1196
    Location:1850 → 2681
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049293.1 Alternate UMICH_Zoey_3.1

    Range
    24968315..25059017 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038519370.1 → XP_038375298.1  golgin subfamily B member 1 isoform X4

  2. XM_038519369.1 → XP_038375297.1  golgin subfamily B member 1 isoform X3

  3. XM_038519368.1 → XP_038375296.1  golgin subfamily B member 1 isoform X2

  4. XM_038519371.1 → XP_038375299.1  golgin subfamily B member 1 isoform X5

  5. XM_038519365.1 → XP_038375293.1  golgin subfamily B member 1 isoform X1

  6. XM_038519366.1 → XP_038375294.1  golgin subfamily B member 1 isoform X1

  7. XM_038519367.1 → XP_038375295.1  golgin subfamily B member 1 isoform X1

  8. XM_038519372.1 → XP_038375300.1  golgin subfamily B member 1 isoform X6

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049774.1 Alternate UNSW_CanFamBas_1.0

    Range
    25010568..25101225 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038647385.1 → XP_038503313.1  golgin subfamily B member 1 isoform X4

  2. XM_038647384.1 → XP_038503312.1  golgin subfamily B member 1 isoform X3

  3. XM_038647383.1 → XP_038503311.1  golgin subfamily B member 1 isoform X2

  4. XM_038647386.1 → XP_038503314.1  golgin subfamily B member 1 isoform X5

  5. XM_038647380.1 → XP_038503308.1  golgin subfamily B member 1 isoform X1

  6. XM_038647381.1 → XP_038503309.1  golgin subfamily B member 1 isoform X1

  7. XM_038647382.1 → XP_038503310.1  golgin subfamily B member 1 isoform X1

  8. XM_038647387.1 → XP_038503315.1  golgin subfamily B member 1 isoform X6

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049254.1 Alternate UU_Cfam_GSD_1.0

    Range
    25567702..25658718 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038582997.1 → XP_038438925.1  golgin subfamily B member 1 isoform X4

    UniProtKB/TrEMBL
    A0A8C0Z3P0

  2. XM_038582996.1 → XP_038438924.1  golgin subfamily B member 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0TDE4

  3. XM_038582995.1 → XP_038438923.1  golgin subfamily B member 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0TDE4

  4. XM_038582998.1 → XP_038438926.1  golgin subfamily B member 1 isoform X5

    UniProtKB/TrEMBL
    A0A8C0TH25

  5. XM_038582992.1 → XP_038438920.1  golgin subfamily B member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0TDE4

  6. XM_038582993.1 → XP_038438921.1  golgin subfamily B member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0TDE4

  7. XM_038582994.1 → XP_038438922.1  golgin subfamily B member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0TDE4

  8. XM_038582999.1 → XP_038438927.1  golgin subfamily B member 1 isoform X6

    UniProtKB/TrEMBL
    A0A8C0MYV8

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006615.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    24954942..25051736 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038462466.1 → XP_038318394.1  golgin subfamily B member 1 isoform X4

    UniProtKB/TrEMBL
    A0A8C0Z3P0, A0A8P0T0H4
    Conserved Domains (2) summary
    COG1196
    Location:778 → 1627
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:2017 → 2740
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. XM_038462465.1 → XP_038318393.1  golgin subfamily B member 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0TDE4
    Conserved Domains (2) summary
    COG1196
    Location:813 → 1662
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:2052 → 2775
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  3. XM_038462464.1 → XP_038318392.1  golgin subfamily B member 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0TDE4
    Conserved Domains (2) summary
    COG1196
    Location:814 → 1663
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:2053 → 2776
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  4. XM_038462467.1 → XP_038318395.1  golgin subfamily B member 1 isoform X5

    UniProtKB/TrEMBL
    A0A8C0TH25, A0A8P0PMM3
    Conserved Domains (2) summary
    COG1196
    Location:819 → 1668
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:2058 → 2781
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  5. XM_014110232.3 → XP_013965707.2  golgin subfamily B member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0TDE4, A0A8P0SGB8
    Conserved Domains (2) summary
    COG1196
    Location:819 → 1668
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:2058 → 2781
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  6. XM_038462462.1 → XP_038318390.1  golgin subfamily B member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0TDE4, A0A8P0SGB8
    Conserved Domains (2) summary
    COG1196
    Location:819 → 1668
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:2058 → 2781
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  7. XM_038462463.1 → XP_038318391.1  golgin subfamily B member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0TDE4, A0A8P0SGB8
    Conserved Domains (2) summary
    COG1196
    Location:819 → 1668
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:2058 → 2781
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  8. XM_038462468.1 → XP_038318396.1  golgin subfamily B member 1 isoform X6

    UniProtKB/TrEMBL
    A0A8C0MYV8
    Conserved Domains (2) summary
    COG1196
    Location:1849 → 2680
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK05771
    Location:1730 → 1887
    PRK05771; V-type ATP synthase subunit I; Validated
Nucleotide Protein
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