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SIN3A SIN3 transcription regulator family member A [ Canis lupus familiaris (dog) ]

Gene ID: 478372, updated on 17-Aug-2024

Summary

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Official Symbol
SIN3Aprovided by VGNC
Official Full Name
SIN3 transcription regulator family member Aprovided by VGNC
Primary source
VGNC:VGNC:46177
See related
Ensembl:ENSCAFG00845020249
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See SIN3A in Genome Data Viewer
Location:
chromosome: 30
Exon count:
23
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 30 NC_051834.1 (38436823..38512188, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 30 NC_006612.4 (38162224..38237534, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 30 NC_049251.1 (38670990..38745906, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 30 NC_049290.1 (38389129..38464067, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 30 NC_049771.1 (38434094..38509422, complement)

Chromosome 30 - NC_051834.1Genomic Context describing neighboring genes Neighboring gene nei like DNA glycosylase 1 Neighboring gene microRNA mir-631 Neighboring gene mannosidase alpha class 2C member 1 Neighboring gene uncharacterized LOC111093280 Neighboring gene uncharacterized LOC119866946 Neighboring gene protein tyrosine phosphatase non-receptor type 9 Neighboring gene snurportin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
paired amphipathic helix protein Sin3a
Names
SIN3 homolog A, transcription regulator
SIN3 transcription regulator homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051834.1 Reference ROS_Cfam_1.0

    Range
    38436823..38512188 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038443002.1 → XP_038298930.1  paired amphipathic helix protein Sin3a

    UniProtKB/TrEMBL
    A0A8C0JR57, A0A8C0TBX5, A0A8C0THK6, A0A8I3PCR3
    Conserved Domains (1) summary
    COG5602
    Location:5 → 1214
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]

  2. XM_038443001.1 → XP_038298929.1  paired amphipathic helix protein Sin3a

    UniProtKB/TrEMBL
    A0A8C0JR57, A0A8C0TBX5, A0A8C0THK6, A0A8I3PCR3
    Conserved Domains (1) summary
    COG5602
    Location:5 → 1214
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]

  3. XM_038443000.1 → XP_038298928.1  paired amphipathic helix protein Sin3a

    UniProtKB/TrEMBL
    A0A8C0JR57, A0A8C0TBX5, A0A8C0THK6, A0A8I3PCR3
    Related
    ENSCAFP00845027945.1, ENSCAFT00845035718.1
    Conserved Domains (1) summary
    COG5602
    Location:5 → 1214
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049290.1 Alternate UMICH_Zoey_3.1

    Range
    38389129..38464067 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038517428.1 → XP_038373356.1  paired amphipathic helix protein Sin3a

    Conserved Domains (1) summary
    COG5602
    Location:5 → 1214
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]

  2. XM_038517427.1 → XP_038373355.1  paired amphipathic helix protein Sin3a

    Conserved Domains (1) summary
    COG5602
    Location:5 → 1214
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]

  3. XM_038517426.1 → XP_038373354.1  paired amphipathic helix protein Sin3a

    Conserved Domains (1) summary
    COG5602
    Location:5 → 1214
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049771.1 Alternate UNSW_CanFamBas_1.0

    Range
    38434094..38509422 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038645406.1 → XP_038501334.1  paired amphipathic helix protein Sin3a

    Conserved Domains (1) summary
    COG5602
    Location:5 → 1214
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]

  2. XM_038645404.1 → XP_038501332.1  paired amphipathic helix protein Sin3a

    Conserved Domains (1) summary
    COG5602
    Location:5 → 1214
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]

  3. XM_038645403.1 → XP_038501331.1  paired amphipathic helix protein Sin3a

    Conserved Domains (1) summary
    COG5602
    Location:5 → 1214
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049251.1 Alternate UU_Cfam_GSD_1.0

    Range
    38670990..38745906 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038581035.1 → XP_038436963.1  paired amphipathic helix protein Sin3a

    UniProtKB/TrEMBL
    A0A8C0JR57, A0A8C0TBX5, A0A8C0THK6, A0A8I3PCR3
    Conserved Domains (1) summary
    COG5602
    Location:5 → 1214
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]

  2. XM_038581034.1 → XP_038436962.1  paired amphipathic helix protein Sin3a

    UniProtKB/TrEMBL
    A0A8C0JR57, A0A8C0TBX5, A0A8C0THK6, A0A8I3PCR3
    Conserved Domains (1) summary
    COG5602
    Location:5 → 1214
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]

  3. XM_038581033.1 → XP_038436961.1  paired amphipathic helix protein Sin3a

    UniProtKB/TrEMBL
    A0A8C0JR57, A0A8C0TBX5, A0A8C0THK6, A0A8I3PCR3
    Conserved Domains (1) summary
    COG5602
    Location:5 → 1214
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006612.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    38162224..38237534 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014109583.3 → XP_013965058.2  paired amphipathic helix protein Sin3a

    UniProtKB/TrEMBL
    A0A8C0JR57, A0A8C0TBX5, A0A8C0THK6, A0A8I3PCR3
    Conserved Domains (1) summary
    COG5602
    Location:5 → 1214
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]

  2. XM_038461289.1 → XP_038317217.1  paired amphipathic helix protein Sin3a

    UniProtKB/TrEMBL
    A0A8C0JR57, A0A8C0TBX5, A0A8C0THK6, A0A8I3PCR3
    Conserved Domains (1) summary
    COG5602
    Location:5 → 1214
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]

  3. XM_038461288.1 → XP_038317216.1  paired amphipathic helix protein Sin3a

    UniProtKB/TrEMBL
    A0A8C0JR57, A0A8C0TBX5, A0A8C0THK6, A0A8I3PCR3
    Conserved Domains (1) summary
    COG5602
    Location:5 → 1214
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]
Nucleotide Protein
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