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SEC23IP SEC23 interacting protein [ Canis lupus familiaris (dog) ]

Gene ID: 477845, updated on 17-Aug-2024

Summary

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Official Symbol
SEC23IPprovided by VGNC
Official Full Name
SEC23 interacting proteinprovided by VGNC
Primary source
VGNC:VGNC:45971
See related
Ensembl:ENSCAFG00845018243
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See SEC23IP in Genome Data Viewer
Location:
chromosome: 28
Exon count:
19
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 28 NC_051832.1 (30539211..30579379)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 28 NC_006610.4 (30149350..30189081)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 28 NC_049249.1 (30307058..30346795)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 28 NC_049288.1 (30091651..30131366)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 28 NC_049769.1 (30114471..30154231)

Chromosome 28 - NC_051832.1Genomic Context describing neighboring genes Neighboring gene minichromosome maintenance complex binding protein Neighboring gene uncharacterized LOC119866527 Neighboring gene coiled-coil domain containing 25 pseudogene Neighboring gene ADP-ribosylation factor 1-like Neighboring gene uncharacterized LOC106557946

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SEC23-interacting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051832.1 Reference ROS_Cfam_1.0

    Range
    30539211..30579379
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038440758.1 → XP_038296686.1  SEC23-interacting protein isoform X1

    UniProtKB/TrEMBL
    A0A8C0R116, A0A8C0RRV5, A0A8C0Z785, A0A8I3P5X7, A0A8I3PAS9
    Related
    ENSCAFP00845025249.1, ENSCAFT00845032298.1
    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 993
    DDHD; DDHD domain

  2. XM_038440757.1 → XP_038296685.1  SEC23-interacting protein isoform X1

    UniProtKB/TrEMBL
    A0A8C0R116, A0A8C0RRV5, A0A8C0Z785, A0A8I3P5X7, A0A8I3PAS9
    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 993
    DDHD; DDHD domain

  3. XM_038440756.1 → XP_038296684.1  SEC23-interacting protein isoform X1

    UniProtKB/TrEMBL
    A0A8C0R116, A0A8C0RRV5, A0A8C0Z785, A0A8I3P5X7, A0A8I3PAS9
    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 993
    DDHD; DDHD domain

  4. XM_038440759.1 → XP_038296687.1  SEC23-interacting protein isoform X1

    UniProtKB/TrEMBL
    A0A8C0R116, A0A8C0RRV5, A0A8C0Z785, A0A8I3P5X7, A0A8I3PAS9
    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 993
    DDHD; DDHD domain

  5. XM_038440760.1 → XP_038296688.1  SEC23-interacting protein isoform X2

    UniProtKB/TrEMBL
    A0A8C0Z785, A0A8I3P5X7
    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 992
    DDHD; DDHD domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049288.1 Alternate UMICH_Zoey_3.1

    Range
    30091651..30131366
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038515359.1 → XP_038371287.1  SEC23-interacting protein isoform X1

    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 993
    DDHD; DDHD domain

  2. XM_038515358.1 → XP_038371286.1  SEC23-interacting protein isoform X1

    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 993
    DDHD; DDHD domain

  3. XM_038515357.1 → XP_038371285.1  SEC23-interacting protein isoform X1

    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 993
    DDHD; DDHD domain

  4. XM_038515360.1 → XP_038371288.1  SEC23-interacting protein isoform X1

    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 993
    DDHD; DDHD domain

  5. XM_038515361.1 → XP_038371289.1  SEC23-interacting protein isoform X2

    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 992
    DDHD; DDHD domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049769.1 Alternate UNSW_CanFamBas_1.0

    Range
    30114471..30154231
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038643180.1 → XP_038499108.1  SEC23-interacting protein isoform X1

    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 993
    DDHD; DDHD domain

  2. XM_038643179.1 → XP_038499107.1  SEC23-interacting protein isoform X1

    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 993
    DDHD; DDHD domain

  3. XM_038643178.1 → XP_038499106.1  SEC23-interacting protein isoform X1

    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 993
    DDHD; DDHD domain

  4. XM_038643181.1 → XP_038499109.1  SEC23-interacting protein isoform X1

    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 993
    DDHD; DDHD domain

  5. XM_038643182.1 → XP_038499110.1  SEC23-interacting protein isoform X2

    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 992
    DDHD; DDHD domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049249.1 Alternate UU_Cfam_GSD_1.0

    Range
    30307058..30346795
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038578969.1 → XP_038434897.1  SEC23-interacting protein isoform X1

    UniProtKB/TrEMBL
    A0A8C0R116, A0A8C0RRV5, A0A8C0Z785, A0A8I3P5X7, A0A8I3PAS9
    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 993
    DDHD; DDHD domain

  2. XM_038578968.1 → XP_038434896.1  SEC23-interacting protein isoform X1

    UniProtKB/TrEMBL
    A0A8C0R116, A0A8C0RRV5, A0A8C0Z785, A0A8I3P5X7, A0A8I3PAS9
    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 993
    DDHD; DDHD domain

  3. XM_038578967.1 → XP_038434895.1  SEC23-interacting protein isoform X1

    UniProtKB/TrEMBL
    A0A8C0R116, A0A8C0RRV5, A0A8C0Z785, A0A8I3P5X7, A0A8I3PAS9
    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 993
    DDHD; DDHD domain

  4. XM_038578970.1 → XP_038434898.1  SEC23-interacting protein isoform X1

    UniProtKB/TrEMBL
    A0A8C0R116, A0A8C0RRV5, A0A8C0Z785, A0A8I3P5X7, A0A8I3PAS9
    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 993
    DDHD; DDHD domain

  5. XM_038578971.1 → XP_038434899.1  SEC23-interacting protein isoform X2

    UniProtKB/TrEMBL
    A0A8C0Z785, A0A8I3P5X7
    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 992
    DDHD; DDHD domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006610.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    30149350..30189081
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005637785.4 → XP_005637842.1  SEC23-interacting protein isoform X1

    See identical proteins and their annotated locations for XP_005637842.1

    UniProtKB/TrEMBL
    A0A8C0R116, A0A8C0RRV5, A0A8C0Z785, A0A8I3P5X7, A0A8I3PAS9
    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 993
    DDHD; DDHD domain

  2. XM_005637784.4 → XP_005637841.1  SEC23-interacting protein isoform X1

    See identical proteins and their annotated locations for XP_005637841.1

    UniProtKB/TrEMBL
    A0A8C0R116, A0A8C0RRV5, A0A8C0Z785, A0A8I3P5X7, A0A8I3PAS9
    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 993
    DDHD; DDHD domain

  3. XM_005637783.4 → XP_005637840.1  SEC23-interacting protein isoform X1

    See identical proteins and their annotated locations for XP_005637840.1

    UniProtKB/TrEMBL
    A0A8C0R116, A0A8C0RRV5, A0A8C0Z785, A0A8I3P5X7, A0A8I3PAS9
    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 993
    DDHD; DDHD domain

  4. XM_005637786.4 → XP_005637843.1  SEC23-interacting protein isoform X1

    See identical proteins and their annotated locations for XP_005637843.1

    UniProtKB/TrEMBL
    A0A8C0R116, A0A8C0RRV5, A0A8C0Z785, A0A8I3P5X7, A0A8I3PAS9
    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 993
    DDHD; DDHD domain

  5. XM_005637787.4 → XP_005637844.1  SEC23-interacting protein isoform X2

    UniProtKB/TrEMBL
    A0A8C0Z785, A0A8I3P5X7
    Conserved Domains (3) summary
    cd09584
    Location:641 → 709
    SAM_sec23ip; SAM domain of sec23ip
    pfam09606
    Location:131 → 273
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam02862
    Location:787 → 992
    DDHD; DDHD domain
Nucleotide Protein
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