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ARMC9 armadillo repeat containing 9 [ Canis lupus familiaris (dog) ]

Gene ID: 477407, updated on 17-Aug-2024

Summary

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Official Symbol
ARMC9provided by VGNC
Official Full Name
armadillo repeat containing 9provided by VGNC
Primary source
VGNC:VGNC:38129
See related
Ensembl:ENSCAFG00845022761
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See ARMC9 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
28
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 25 NC_051829.1 (43374305..43522462)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 25 NC_006607.4 (43677561..43824074)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 25 NC_049246.1 (43300930..43448386)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 25 NC_049285.1 (43302605..43450077)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 25 NC_049766.1 (43145863..43293242)

Chromosome 25 - NC_051829.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111092482 Neighboring gene uncharacterized LOC111092325 Neighboring gene uncharacterized LOC119865963 Neighboring gene uncharacterized LOC119865962 Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centriole IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary tip IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lisH domain-containing protein ARMC9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051829.1 Reference ROS_Cfam_1.0

    Range
    43374305..43522462
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038435754.1 → XP_038291682.1  lisH domain-containing protein ARMC9 isoform X1

    UniProtKB/TrEMBL
    A0A8C0TNR4
    Conserved Domains (1) summary
    smart00667
    Location:7 → 36
    LisH; Lissencephaly type-1-like homology motif

  2. XM_038435756.1 → XP_038291684.1  lisH domain-containing protein ARMC9 isoform X3

    UniProtKB/TrEMBL
    A0A8C0TNR4, A0A8I3PM24
    Related
    ENSCAFP00845031921.1, ENSCAFT00845040774.1
    Conserved Domains (1) summary
    smart00667
    Location:7 → 36
    LisH; Lissencephaly type-1-like homology motif

  3. XM_038435757.1 → XP_038291685.1  lisH domain-containing protein ARMC9 isoform X4

    UniProtKB/TrEMBL
    A0A8I3PIE2
    Related
    ENSCAFP00845032010.1, ENSCAFT00845040878.1
    Conserved Domains (1) summary
    smart00667
    Location:7 → 36
    LisH; Lissencephaly type-1-like homology motif

  4. XM_038435758.1 → XP_038291686.1  lisH domain-containing protein ARMC9 isoform X5

    UniProtKB/TrEMBL
    A0A8C0LJP0
    Conserved Domains (1) summary
    smart00667
    Location:7 → 36
    LisH; Lissencephaly type-1-like homology motif

  5. XM_038435755.1 → XP_038291683.1  lisH domain-containing protein ARMC9 isoform X2

    UniProtKB/TrEMBL
    A0A8I3PDT6
    Related
    ENSCAFP00845032163.1, ENSCAFT00845041048.1

  6. XM_038435759.1 → XP_038291687.1  lisH domain-containing protein ARMC9 isoform X6

    UniProtKB/TrEMBL
    A0A8I3PIE2

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049285.1 Alternate UMICH_Zoey_3.1

    Range
    43302605..43450077
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038510682.1 → XP_038366610.1  lisH domain-containing protein ARMC9 isoform X3

  2. XM_038510684.1 → XP_038366612.1  lisH domain-containing protein ARMC9 isoform X8

  3. XM_038510685.1 → XP_038366613.1  lisH domain-containing protein ARMC9 isoform X9

    Conserved Domains (1) summary
    smart00667
    Location:7 → 36
    LisH; Lissencephaly type-1-like homology motif

  4. XM_038510683.1 → XP_038366611.1  lisH domain-containing protein ARMC9 isoform X7

  5. XM_038510687.1 → XP_038366615.1  lisH domain-containing protein ARMC9 isoform X11

  6. XM_038510686.1 → XP_038366614.1  lisH domain-containing protein ARMC9 isoform X10

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049766.1 Alternate UNSW_CanFamBas_1.0

    Range
    43145863..43293242
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038638460.1 → XP_038494388.1  lisH domain-containing protein ARMC9 isoform X1

  2. XM_038638462.1 → XP_038494390.1  lisH domain-containing protein ARMC9 isoform X3

    Conserved Domains (2) summary
    smart00667
    Location:7 → 36
    LisH; Lissencephaly type-1-like homology motif
    cl41730
    Location:651 → 802
    KLF9_13_N-like; Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins

  3. XM_038638463.1 → XP_038494391.1  lisH domain-containing protein ARMC9 isoform X4

  4. XM_038638464.1 → XP_038494392.1  lisH domain-containing protein ARMC9 isoform X5

    Conserved Domains (1) summary
    smart00667
    Location:7 → 36
    LisH; Lissencephaly type-1-like homology motif

  5. XM_038638461.1 → XP_038494389.1  lisH domain-containing protein ARMC9 isoform X2

  6. XM_038638465.1 → XP_038494393.1  lisH domain-containing protein ARMC9 isoform X6

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049246.1 Alternate UU_Cfam_GSD_1.0

    Range
    43300930..43448386
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038574163.1 → XP_038430091.1  lisH domain-containing protein ARMC9 isoform X1

    UniProtKB/TrEMBL
    A0A8C0TNR4

  2. XM_038574166.1 → XP_038430094.1  lisH domain-containing protein ARMC9 isoform X3

    UniProtKB/TrEMBL
    A0A8C0TNR4

  3. XM_038574167.1 → XP_038430095.1  lisH domain-containing protein ARMC9 isoform X4

    UniProtKB/TrEMBL
    A0A8I3PIE2

  4. XM_038574168.1 → XP_038430096.1  lisH domain-containing protein ARMC9 isoform X5

    UniProtKB/TrEMBL
    A0A8C0LJP0
    Conserved Domains (1) summary
    smart00667
    Location:7 → 36
    LisH; Lissencephaly type-1-like homology motif

  5. XM_038574170.1 → XP_038430098.1  lisH domain-containing protein ARMC9 isoform X12

    UniProtKB/TrEMBL
    A0A8P0SFQ4

  6. XM_038574165.1 → XP_038430093.1  lisH domain-containing protein ARMC9 isoform X2

    UniProtKB/TrEMBL
    A0A8I3PDT6

  7. XM_038574169.1 → XP_038430097.1  lisH domain-containing protein ARMC9 isoform X6

    UniProtKB/TrEMBL
    A0A8I3PIE2

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006607.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    43677561..43824074
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_534602.7 → XP_534602.5  lisH domain-containing protein ARMC9 isoform X3

    UniProtKB/TrEMBL
    A0A8C0NWI0, A0A8C0TNR4, A0A8P0P411
    Conserved Domains (2) summary
    smart00667
    Location:7 → 36
    LisH; Lissencephaly type-1-like homology motif
    cl41730
    Location:651 → 802
    KLF9_13_N-like; Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins

  2. XM_022409713.2 → XP_022265421.2  lisH domain-containing protein ARMC9 isoform X14

    UniProtKB/TrEMBL
    A0A8C0Z5V9, A0A8P0NWZ6
    Conserved Domains (2) summary
    smart00667
    Location:7 → 36
    LisH; Lissencephaly type-1-like homology motif
    cl41730
    Location:594 → 745
    KLF9_13_N-like; Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins

  3. XM_038458325.1 → XP_038314253.1  lisH domain-containing protein ARMC9 isoform X15

    UniProtKB/TrEMBL
    A0A8C0LJP0
    Conserved Domains (1) summary
    smart00667
    Location:7 → 36
    LisH; Lissencephaly type-1-like homology motif

  4. XM_038458324.1 → XP_038314252.1  lisH domain-containing protein ARMC9 isoform X13

    UniProtKB/TrEMBL
    A0A8C0TL34
    Conserved Domains (1) summary
    cl41730
    Location:641 → 792
    KLF9_13_N-like; Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins

  5. XM_022409716.2 → XP_022265424.2  lisH domain-containing protein ARMC9 isoform X17

    UniProtKB/TrEMBL
    A0A8C0Z5V9
    Conserved Domains (1) summary
    cl41730
    Location:494 → 645
    KLF9_13_N-like; Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins

  6. XM_022409715.2 → XP_022265423.2  lisH domain-containing protein ARMC9 isoform X16

    UniProtKB/TrEMBL
    A0A8C0Z5V9
    Conserved Domains (1) summary
    cl41730
    Location:495 → 646
    KLF9_13_N-like; Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins
Nucleotide Protein
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