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SFTPC surfactant protein C [ Canis lupus familiaris (dog) ]

Gene ID: 477385, updated on 17-Aug-2024

Summary

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Official Symbol
SFTPCprovided by VGNC
Official Full Name
surfactant protein Cprovided by VGNC
Primary source
VGNC:VGNC:54994
See related
Ensembl:ENSCAFG00845025534
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
SP-C; SFTP2
Orthologs
human mouse all
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Genomic context

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See SFTPC in Genome Data Viewer
Location:
chromosome: 25
Exon count:
6
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 25 NC_051829.1 (35299616..35302366, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 25 NC_006607.4 (35677864..35680614, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 25 NC_049246.1 (35255134..35257884, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 25 NC_049285.1 (35245093..35247843, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 25 NC_049766.1 (35099613..35102363, complement)

Chromosome 25 - NC_051829.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119865949 Neighboring gene phytanoyl-CoA 2-hydroxylase interacting protein Neighboring gene bone morphogenetic protein 1 Neighboring gene leucine rich repeat LGI family member 3 Neighboring gene receptor accessory protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in respiratory gaseous exchange by respiratory system IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in alveolar lamellar body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
surfactant protein C; pulmonary surfactant-associated protein C
Names
Pulmonary surfactant-associated protein C
Pulmonary surfactant-associated proteolipid SPL(Val)
surfactant, pulmonary-associated protein C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051829.1 Reference ROS_Cfam_1.0

    Range
    35299616..35302366 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038434634.1 → XP_038290562.1  pulmonary surfactant-associated protein C isoform X1

    UniProtKB/TrEMBL
    A0A8C0KZN9, A0A8C0TKL7, A0A8I3S9H9
    Related
    ENSCAFP00845035440.1, ENSCAFT00845045197.1
    Conserved Domains (1) summary
    smart00019
    Location:10 → 200
    SF_P; Pulmonary surfactant proteins

  2. XM_038434635.1 → XP_038290563.1  pulmonary surfactant-associated protein C isoform X2

    Conserved Domains (1) summary
    smart00019
    Location:10 → 147
    SF_P; Pulmonary surfactant proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049285.1 Alternate UMICH_Zoey_3.1

    Range
    35245093..35247843 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038511044.1 → XP_038366972.1  pulmonary surfactant-associated protein C isoform X1

    Conserved Domains (1) summary
    smart00019
    Location:10 → 200
    SF_P; Pulmonary surfactant proteins

  2. XM_038511045.1 → XP_038366973.1  pulmonary surfactant-associated protein C isoform X2

    Conserved Domains (1) summary
    smart00019
    Location:10 → 147
    SF_P; Pulmonary surfactant proteins

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049766.1 Alternate UNSW_CanFamBas_1.0

    Range
    35099613..35102363 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038637319.1 → XP_038493247.1  pulmonary surfactant-associated protein C isoform X1

    Conserved Domains (1) summary
    smart00019
    Location:10 → 200
    SF_P; Pulmonary surfactant proteins

  2. XM_038637320.1 → XP_038493248.1  pulmonary surfactant-associated protein C isoform X2

    Conserved Domains (1) summary
    smart00019
    Location:10 → 147
    SF_P; Pulmonary surfactant proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049246.1 Alternate UU_Cfam_GSD_1.0

    Range
    35255134..35257884 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038573075.1 → XP_038429003.1  pulmonary surfactant-associated protein C isoform X1

    UniProtKB/TrEMBL
    A0A8C0KZN9, A0A8C0TKL7, A0A8I3S9H9
    Conserved Domains (1) summary
    smart00019
    Location:10 → 200
    SF_P; Pulmonary surfactant proteins

  2. XM_038573076.1 → XP_038429004.1  pulmonary surfactant-associated protein C isoform X2

    Conserved Domains (1) summary
    smart00019
    Location:10 → 147
    SF_P; Pulmonary surfactant proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006607.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    35677864..35680614 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_534578.6 → XP_534578.4  pulmonary surfactant-associated protein C isoform X1

    UniProtKB/TrEMBL
    A0A8C0KZN9, A0A8C0TKL7, A0A8I3S9H9
    Conserved Domains (1) summary
    smart00019
    Location:10 → 200
    SF_P; Pulmonary surfactant proteins

  2. XM_014107485.3 → XP_013962960.2  pulmonary surfactant-associated protein C isoform X2

    Conserved Domains (1) summary
    smart00019
    Location:10 → 147
    SF_P; Pulmonary surfactant proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P22397.1 GenPept UniProtKB/Swiss-Prot:P22397

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