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DHX36 DEAH-box helicase 36 [ Canis lupus familiaris (dog) ]

Gene ID: 477117, updated on 17-Aug-2024

Summary

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Official Symbol
DHX36provided by VGNC
Official Full Name
DEAH-box helicase 36provided by VGNC
Primary source
VGNC:VGNC:39946
See related
Ensembl:ENSCAFG00845020573
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See DHX36 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
25
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 23 NC_051827.1 (49034891..49086747, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 23 NC_006605.4 (48271774..48335495, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 23 NC_049244.1 (48954309..49018059, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 23 NC_049283.1 (48615676..48679491, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 23 NC_049764.1 (48671780..48735432, complement)

Chromosome 23 - NC_051827.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102151773 Neighboring gene Rho guanine nucleotide exchange factor 26 Neighboring gene uncharacterized LOC119865436 Neighboring gene G protein-coupled receptor 149

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables G-quadruplex RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DHX36; ATP-dependent DNA/RNA helicase DHX36; LOW QUALITY PROTEIN: ATP-dependent DNA/RNA helicase DHX36
XP_022264476.1
XP_022264477.1
XP_038288648.1
XP_038313204.1
XP_038313205.1
XP_038313206.1
XP_038363947.1
XP_038363948.1
XP_038363950.1
XP_038363951.1
XP_038363952.1
XP_038427190.1
XP_038427191.1
XP_038427192.1
XP_038427193.1
XP_038427194.1
XP_038491384.1
XP_038491385.1
XP_038491386.1
XP_038491387.1
XP_038491388.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051827.1 Reference ROS_Cfam_1.0

    Range
    49034891..49086747 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038432720.1 → XP_038288648.1  LOW QUALITY PROTEIN: ATP-dependent DNA/RNA helicase DHX36 isoform X1

    UniProtKB/TrEMBL
    A0A8C0JWD4
    Related
    ENSCAFP00845028581.1, ENSCAFT00845036522.1
    Conserved Domains (2) summary
    COG1643
    Location:160 → 896
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    PRK12704
    Location:58 → 210
    PRK12704; phosphodiesterase; Provisional

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049283.1 Alternate UMICH_Zoey_3.1

    Range
    48615676..48679491 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038508023.1 → XP_038363951.1  ATP-dependent DNA/RNA helicase DHX36 isoform X4

    Conserved Domains (1) summary
    COG1643
    Location:110 → 846
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

  2. XM_038508024.1 → XP_038363952.1  ATP-dependent DNA/RNA helicase DHX36 isoform X4

    Conserved Domains (1) summary
    COG1643
    Location:110 → 846
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

  3. XM_038508022.1 → XP_038363950.1  ATP-dependent DNA/RNA helicase DHX36 isoform X3

    Conserved Domains (1) summary
    COG1643
    Location:128 → 864
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

  4. XM_038508020.1 → XP_038363948.1  ATP-dependent DNA/RNA helicase DHX36 isoform X2

  5. XM_038508019.1 → XP_038363947.1  ATP-dependent DNA/RNA helicase DHX36 isoform X1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049764.1 Alternate UNSW_CanFamBas_1.0

    Range
    48671780..48735432 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038635459.1 → XP_038491387.1  ATP-dependent DNA/RNA helicase DHX36 isoform X7

    Conserved Domains (1) summary
    COG1643
    Location:110 → 846
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

  2. XM_038635460.1 → XP_038491388.1  ATP-dependent DNA/RNA helicase DHX36 isoform X7

    Conserved Domains (1) summary
    COG1643
    Location:110 → 846
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

  3. XM_038635458.1 → XP_038491386.1  ATP-dependent DNA/RNA helicase DHX36 isoform X6

    Conserved Domains (1) summary
    COG1643
    Location:128 → 864
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

  4. XM_038635457.1 → XP_038491385.1  ATP-dependent DNA/RNA helicase DHX36 isoform X5

  5. XM_038635456.1 → XP_038491384.1  ATP-dependent DNA/RNA helicase DHX36 isoform X1

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049244.1 Alternate UU_Cfam_GSD_1.0

    Range
    48954309..49018059 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038571265.1 → XP_038427193.1  ATP-dependent DNA/RNA helicase DHX36 isoform X10

    UniProtKB/TrEMBL
    A0A8I3PAP2
    Conserved Domains (1) summary
    COG1643
    Location:110 → 846
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

  2. XM_038571266.1 → XP_038427194.1  ATP-dependent DNA/RNA helicase DHX36 isoform X10

    UniProtKB/TrEMBL
    A0A8I3PAP2
    Conserved Domains (1) summary
    COG1643
    Location:110 → 846
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

  3. XM_038571264.1 → XP_038427192.1  ATP-dependent DNA/RNA helicase DHX36 isoform X9

    UniProtKB/TrEMBL
    A0A8I3PAP2
    Conserved Domains (1) summary
    COG1643
    Location:128 → 864
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

  4. XM_038571263.1 → XP_038427191.1  ATP-dependent DNA/RNA helicase DHX36 isoform X8

    UniProtKB/TrEMBL
    A0A8C0JWD4

  5. XM_038571262.1 → XP_038427190.1  ATP-dependent DNA/RNA helicase DHX36 isoform X1

    UniProtKB/TrEMBL
    A0A8C0JWD4

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006605.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    48271774..48335495 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038457277.1 → XP_038313205.1  ATP-dependent DNA/RNA helicase DHX36 isoform X13

    UniProtKB/TrEMBL
    A0A8I3PAP2
    Conserved Domains (1) summary
    COG1643
    Location:110 → 846
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

  2. XM_038457278.1 → XP_038313206.1  ATP-dependent DNA/RNA helicase DHX36 isoform X13

    UniProtKB/TrEMBL
    A0A8I3PAP2
    Conserved Domains (1) summary
    COG1643
    Location:110 → 846
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

  3. XM_038457276.1 → XP_038313204.1  ATP-dependent DNA/RNA helicase DHX36 isoform X12

    UniProtKB/TrEMBL
    A0A8I3PAP2
    Conserved Domains (1) summary
    COG1643
    Location:128 → 864
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

  4. XM_022408769.2 → XP_022264477.1  ATP-dependent DNA/RNA helicase DHX36 isoform X11

    UniProtKB/TrEMBL
    A0A8C0JWD4
    Conserved Domains (2) summary
    COG1643
    Location:159 → 862
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cl25602
    Location:57 → 209
    DUF3552; Domain of unknown function (DUF3552)

  5. XM_022408768.2 → XP_022264476.1  ATP-dependent DNA/RNA helicase DHX36 isoform X1

    UniProtKB/TrEMBL
    A0A8C0JWD4
    Conserved Domains (2) summary
    COG1643
    Location:159 → 895
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cl25602
    Location:57 → 209
    DUF3552; Domain of unknown function (DUF3552)
Nucleotide Protein
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