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LOC477072 serotransferrin [ Canis lupus familiaris (dog) ]

Gene ID: 477072, updated on 5-Mar-2024

Summary

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Gene symbol
LOC477072
Gene description
serotransferrin
See related
Ensembl:ENSCAFG00845030091
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See LOC477072 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
17
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 23 NC_051827.1 (31178649..31204226)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 23 NC_006605.4 (30637375..30662940)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 23 NC_049244.1 (31177861..31203421)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 23 NC_049283.1 (30872448..30898034)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 23 NC_049764.1 (30930277..30955845)

Chromosome 23 - NC_051827.1Genomic Context describing neighboring genes Neighboring gene DNA topoisomerase II binding protein 1 Neighboring gene inhibitor of carbonic anhydrase Neighboring gene uncharacterized LOC119865392 Neighboring gene uncharacterized LOC119865393 Neighboring gene SRP receptor subunit beta Neighboring gene RAB6B, member RAS oncogene family

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ferric iron binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antibacterial humoral response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular iron ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in iron ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in recycling endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serotransferrin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051827.1 Reference ROS_Cfam_1.0

    Range
    31178649..31204226
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038432385.1 → XP_038288313.1  serotransferrin

    UniProtKB/TrEMBL
    A0A8C0LV82
    Related
    ENSCAFP00845041997.1, ENSCAFT00845053451.1
    Conserved Domains (2) summary
    cd13617
    Location:361 → 689
    PBP2_transferrin_C; The C-lobe of transferrin, a member of the type 2 periplasmic binding protein fold superfamily
    pfam00405
    Location:26 → 350
    Transferrin

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049283.1 Alternate UMICH_Zoey_3.1

    Range
    30872448..30898034
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038507684.1 → XP_038363612.1  serotransferrin

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049764.1 Alternate UNSW_CanFamBas_1.0

    Range
    30930277..30955845
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038635117.1 → XP_038491045.1  serotransferrin

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049244.1 Alternate UU_Cfam_GSD_1.0

    Range
    31177861..31203421
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038570924.1 → XP_038426852.1  serotransferrin

    UniProtKB/TrEMBL
    A0A8C0LV82

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006605.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    30637375..30662940
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_534268.7 → XP_534268.4  serotransferrin

    UniProtKB/TrEMBL
    A0A8C0LV82
    Conserved Domains (4) summary
    smart00094
    Location:364 → 690
    TR_FER; Transferrin
    cd13617
    Location:361 → 689
    PBP2_transferrin_C; The C-lobe of transferrin, a member of the type 2 periplasmic binding protein fold superfamily
    cd13618
    Location:25 → 349
    PBP2_transferrin_N; The N-lobe of transferrin, a member of the type 2 periplasmic binding protein fold superfamily
    pfam00405
    Location:26 → 350
    Transferrin; Transferrin
Nucleotide Protein
Heading Accession and Version

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