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DDX21 DExD-box helicase 21 [ Canis lupus familiaris (dog) ]

Gene ID: 476891, updated on 17-Aug-2024

Summary

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Official Symbol
DDX21provided by VGNC
Official Full Name
DExD-box helicase 21provided by VGNC
Primary source
VGNC:VGNC:39849
See related
Ensembl:ENSCAFG00845003052
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See DDX21 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
15
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 4 NC_051808.1 (20381832..20407325)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 4 NC_006586.4 (20240134..20264990)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 4 NC_049225.1 (20828776..20854073)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 4 NC_049264.1 (20282539..20307462)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 4 NC_049745.1 (20485654..20510665)

Chromosome 4 - NC_051808.1Genomic Context describing neighboring genes Neighboring gene storkhead box 1 Neighboring gene DExD-box helicase 50 Neighboring gene ubiquitin-conjugating enzyme E2 N-like Neighboring gene kinesin family binding protein Neighboring gene nucleolar and spindle-associated protein 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleolar RNA helicase 2
Names
DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
DEAD-box helicase 21
XP_038329028.1
XP_038390083.1
XP_038454399.1
XP_038518702.1
XP_851746.2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051808.1 Reference ROS_Cfam_1.0

    Range
    20381832..20407325
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038662774.1 → XP_038518702.1  nucleolar RNA helicase 2

    UniProtKB/TrEMBL
    A0A8C0MUF8, A0A8C0NMM2, A0A8I3RSL8
    Related
    ENSCAFP00845004294.1, ENSCAFT00845005397.1
    Conserved Domains (3) summary
    COG0513
    Location:163 → 589
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd12936
    Location:619 → 711
    GUCT_RHII_Gualpha_beta; RNA-binding GUCT domain found in vertebrate RNA helicase II/Gualpha (RH-II/Gualpha), RNA helicase II/Gubeta (RH-II/Gubeta) and similar proteins
    cd17944
    Location:199 → 400
    DEADc_DDX21_DDX50; DEAD-box helicase domain of DEAD box proteins 21 and 50

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049264.1 Alternate UMICH_Zoey_3.1

    Range
    20282539..20307462
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038473100.1 → XP_038329028.1  nucleolar RNA helicase 2

    Conserved Domains (3) summary
    COG0513
    Location:163 → 589
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd12936
    Location:619 → 711
    GUCT_RHII_Gualpha_beta; RNA-binding GUCT domain found in vertebrate RNA helicase II/Gualpha (RH-II/Gualpha), RNA helicase II/Gubeta (RH-II/Gubeta) and similar proteins
    cd17944
    Location:199 → 400
    DEADc_DDX21_DDX50; DEAD-box helicase domain of DEAD box proteins 21 and 50

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049745.1 Alternate UNSW_CanFamBas_1.0

    Range
    20485654..20510665
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038598471.1 → XP_038454399.1  nucleolar RNA helicase 2

    Conserved Domains (3) summary
    COG0513
    Location:163 → 589
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd12936
    Location:619 → 711
    GUCT_RHII_Gualpha_beta; RNA-binding GUCT domain found in vertebrate RNA helicase II/Gualpha (RH-II/Gualpha), RNA helicase II/Gubeta (RH-II/Gubeta) and similar proteins
    cd17944
    Location:199 → 400
    DEADc_DDX21_DDX50; DEAD-box helicase domain of DEAD box proteins 21 and 50

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049225.1 Alternate UU_Cfam_GSD_1.0

    Range
    20828776..20854073
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038534155.1 → XP_038390083.1  nucleolar RNA helicase 2

    UniProtKB/TrEMBL
    A0A8C0MUF8, A0A8C0NMM2, A0A8I3RSL8
    Conserved Domains (3) summary
    COG0513
    Location:163 → 589
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd12936
    Location:619 → 711
    GUCT_RHII_Gualpha_beta; RNA-binding GUCT domain found in vertebrate RNA helicase II/Gualpha (RH-II/Gualpha), RNA helicase II/Gubeta (RH-II/Gubeta) and similar proteins
    cd17944
    Location:199 → 400
    DEADc_DDX21_DDX50; DEAD-box helicase domain of DEAD box proteins 21 and 50

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006586.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    20240134..20264990
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_846653.6 → XP_851746.2  nucleolar RNA helicase 2

    UniProtKB/TrEMBL
    A0A8C0MUF8, A0A8C0NMM2, A0A8I3RSL8
    Conserved Domains (3) summary
    COG0513
    Location:163 → 589
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd12936
    Location:619 → 711
    GUCT_RHII_Gualpha_beta; RNA-binding GUCT domain found in vertebrate RNA helicase II/Gualpha (RH-II/Gualpha), RNA helicase II/Gubeta (RH-II/Gubeta) and similar proteins
    cd17944
    Location:199 → 400
    DEADc_DDX21_DDX50; DEAD-box helicase domain of DEAD box proteins 21 and 50
Nucleotide Protein
Heading Accession and Version

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