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EIF3F eukaryotic translation initiation factor 3 subunit F [ Canis lupus familiaris (dog) ]

Gene ID: 476840, updated on 17-Aug-2024

Summary

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Official Symbol
EIF3Fprovided by VGNC
Official Full Name
eukaryotic translation initiation factor 3 subunit Fprovided by VGNC
Primary source
VGNC:VGNC:40272
See related
Ensembl:ENSCAFG00845011461
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See EIF3F in Genome Data Viewer
Location:
chromosome: 21
Exon count:
8
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 21 NC_051825.1 (32392321..32399667)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 21 NC_006603.4 (31087628..31094967)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 21 NC_049242.1 (32122018..32129374)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 21 NC_049281.1 (31662107..31669456)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 21 NC_049762.1 (31828280..31835618)

Chromosome 21 - NC_051825.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 10 subfamily A member 3 Neighboring gene NLR family pyrin domain containing 10 Neighboring gene uncharacterized LOC119865000 Neighboring gene TUB bipartite transcription factor Neighboring gene RIC3 acetylcholine receptor chaperone

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metallopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of eukaryotic translation initiation factor 3 complex, eIF3m IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
eukaryotic translation initiation factor 3 subunit F
XP_038286348.1
XP_038361657.1
XP_038424882.1
XP_038489051.1
XP_534044.5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051825.1 Reference ROS_Cfam_1.0

    Range
    32392321..32399667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038430420.1 → XP_038286348.1  eukaryotic translation initiation factor 3 subunit F

    UniProtKB/TrEMBL
    A0A8C0KB30, A0A8C0QA67, A0A8I3NFD2
    Related
    ENSCAFP00845015943.1, ENSCAFT00845020340.1
    Conserved Domains (1) summary
    cd08064
    Location:104 → 366
    MPN_eIF3f; Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049281.1 Alternate UMICH_Zoey_3.1

    Range
    31662107..31669456
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038505729.1 → XP_038361657.1  eukaryotic translation initiation factor 3 subunit F

    Conserved Domains (1) summary
    cd08064
    Location:104 → 366
    MPN_eIF3f; Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049762.1 Alternate UNSW_CanFamBas_1.0

    Range
    31828280..31835618
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038633123.1 → XP_038489051.1  eukaryotic translation initiation factor 3 subunit F

    Conserved Domains (1) summary
    cd08064
    Location:104 → 366
    MPN_eIF3f; Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049242.1 Alternate UU_Cfam_GSD_1.0

    Range
    32122018..32129374
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038568954.1 → XP_038424882.1  eukaryotic translation initiation factor 3 subunit F

    UniProtKB/TrEMBL
    A0A8C0KB30, A0A8C0QA67, A0A8I3NFD2
    Conserved Domains (1) summary
    cd08064
    Location:104 → 366
    MPN_eIF3f; Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006603.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    31087628..31094967
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_534044.6 → XP_534044.5  eukaryotic translation initiation factor 3 subunit F

    UniProtKB/TrEMBL
    A0A8C0KB30, A0A8C0QA67, A0A8I3NFD2
    Conserved Domains (1) summary
    cd08064
    Location:104 → 366
    MPN_eIF3f; Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f
Nucleotide Protein
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