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TRPC2 transient receptor potential cation channel subfamily C member 2 [ Canis lupus familiaris (dog) ]

Gene ID: 476820, updated on 17-Aug-2024

Summary

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Official Symbol
TRPC2provided by VGNC
Official Full Name
transient receptor potential cation channel subfamily C member 2provided by VGNC
Primary source
VGNC:VGNC:109283
See related
Ensembl:ENSCAFG00845011165
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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Genomic context

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See TRPC2 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
13
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 21 NC_051825.1 (26393446..26411710)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 21 NC_006603.4 (25954186..25972451)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 21 NC_049242.1 (26302824..26321080)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 21 NC_049281.1 (26184856..26203094)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 21 NC_049762.1 (26400905..26419148)

Chromosome 21 - NC_051825.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 121 Neighboring gene DPH3 homolog Neighboring gene U6 spliceosomal RNA Neighboring gene XRCC1 N-terminal domain containing 1 Neighboring gene ADP-ribosyltransferase 5 Neighboring gene cholinergic receptor nicotinic alpha 10 subunit Neighboring gene ADP-ribosyltransferase 1 Neighboring gene nucleoporin 98 and 96 precursor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables inositol 1,4,5 trisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables store-operated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in manganese ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cation channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
short transient receptor potential channel 2
Names
transient receptor potential cation channel subfamily C protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001374470.1 → NP_001361399.1  short transient receptor potential channel 2

    Status: VALIDATED

    Source sequence(s)
    JAAUVH010000057
    UniProtKB/TrEMBL
    A0A8C0RQB6, A0A8I3NHM9, A0A8P0N8G7
    Related
    ENSCAFP00845015500.1, ENSCAFT00845019800.1
    Conserved Domains (2) summary
    TIGR00870
    Location:24 → 692
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:93 → 131
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051825.1 Reference ROS_Cfam_1.0

    Range
    26393446..26411710
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049281.1 Alternate UMICH_Zoey_3.1

    Range
    26184856..26203094
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049762.1 Alternate UNSW_CanFamBas_1.0

    Range
    26400905..26419148
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049242.1 Alternate UU_Cfam_GSD_1.0

    Range
    26302824..26321080
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006603.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    25954186..25972451
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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