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CALR3 calreticulin 3 [ Canis lupus familiaris (dog) ]

Gene ID: 476680, updated on 17-Aug-2024

Summary

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Official Symbol
CALR3provided by VGNC
Official Full Name
calreticulin 3provided by VGNC
Primary source
VGNC:VGNC:38675
See related
Ensembl:ENSCAFG00845029913
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See CALR3 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
9
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (46526579..46548627)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (45953092..45974897)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (46448080..46470106)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (45761738..45783531)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (46172531..46194491)

Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102154238 Neighboring gene solute carrier family 35 member E1 Neighboring gene calcium homeostasis endoplasmic reticulum protein Neighboring gene chromosome 20 C19orf44 homolog Neighboring gene epidermal growth factor receptor pathway substrate 15 like 1 Neighboring gene KLF transcription factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calreticulin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051824.1 Reference ROS_Cfam_1.0

    Range
    46526579..46548627
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038428302.1 → XP_038284230.1  calreticulin-3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KAV7, A0A8C0P9A6, A0A8C0SUX7, A0A8I3Q2D5
    Related
    ENSCAFP00845041604.1, ENSCAFT00845052990.1
    Conserved Domains (1) summary
    pfam00262
    Location:23 → 319
    Calreticulin; Calreticulin family

  2. XM_038428303.1 → XP_038284231.1  calreticulin-3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0SUX7
    Conserved Domains (1) summary
    pfam00262
    Location:6 → 260
    Calreticulin; Calreticulin family

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049280.1 Alternate UMICH_Zoey_3.1

    Range
    45761738..45783531
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038503945.1 → XP_038359873.1  calreticulin-3 isoform X1

    Conserved Domains (1) summary
    pfam00262
    Location:23 → 319
    Calreticulin; Calreticulin family

  2. XM_038503946.1 → XP_038359874.1  calreticulin-3 isoform X2

    Conserved Domains (1) summary
    pfam00262
    Location:6 → 260
    Calreticulin; Calreticulin family

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

    Range
    46172531..46194491
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038631120.1 → XP_038487048.1  calreticulin-3 isoform X1

    Conserved Domains (1) summary
    pfam00262
    Location:23 → 319
    Calreticulin; Calreticulin family

  2. XM_038631121.1 → XP_038487049.1  calreticulin-3 isoform X2

    Conserved Domains (1) summary
    pfam00262
    Location:6 → 260
    Calreticulin; Calreticulin family

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

    Range
    46448080..46470106
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038566969.1 → XP_038422897.1  calreticulin-3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KAV7, A0A8C0P9A6, A0A8C0SUX7, A0A8I3Q2D5
    Conserved Domains (1) summary
    pfam00262
    Location:23 → 319
    Calreticulin; Calreticulin family

  2. XM_038566970.1 → XP_038422898.1  calreticulin-3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0SUX7
    Conserved Domains (1) summary
    pfam00262
    Location:6 → 260
    Calreticulin; Calreticulin family

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    45953092..45974897
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_533885.6 → XP_533885.1  calreticulin-3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KAV7, A0A8C0P9A6, A0A8C0SUX7, A0A8I3Q2D5
    Conserved Domains (1) summary
    pfam00262
    Location:23 → 319
    Calreticulin; Calreticulin family

  2. XM_005632739.2 → XP_005632796.1  calreticulin-3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0SUX7
    Conserved Domains (1) summary
    pfam00262
    Location:6 → 260
    Calreticulin; Calreticulin family
Nucleotide Protein
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