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CNTN3 contactin 3 [ Canis lupus familiaris (dog) ]

Gene ID: 476555, updated on 17-Aug-2024

Summary

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Official Symbol
CNTN3provided by VGNC
Official Full Name
contactin 3provided by VGNC
Primary source
VGNC:VGNC:39434
See related
Ensembl:ENSCAFG00845006575
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See CNTN3 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
24
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (17728935..18058376)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (17662587..17991269)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (17825134..18154638)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (17420511..17748589)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (17766588..18093543)

Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like Neighboring gene uncharacterized LOC119864651 Neighboring gene uncharacterized LOC119864573 Neighboring gene uncharacterized LOC111091267

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051824.1 Reference ROS_Cfam_1.0

    Range
    17728935..18058376
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038427131.1 → XP_038283059.1  contactin-3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KR13, A0A8C0QB83, A0A8I3RTF0
    Related
    ENSCAFP00845009129.1, ENSCAFT00845011692.1
    Conserved Domains (3) summary
    cd00063
    Location:598 → 695
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:498 → 504
    Ig; Ig strand A [structural motif]
    cl11960
    Location:498 → 598
    Ig; Immunoglobulin domain

  2. XM_038427133.1 → XP_038283061.1  contactin-3 isoform X3

    UniProtKB/TrEMBL
    A0A8C0KR13, A0A8I3N1X8, A0A8P0NUV9
    Related
    ENSCAFP00845009232.1, ENSCAFT00845011831.1
    Conserved Domains (4) summary
    smart00060
    Location:598 → 659
    FN3; Fibronectin type 3 domain
    cd00063
    Location:755 → 847
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:498 → 504
    Ig; Ig strand A [structural motif]
    cl11960
    Location:498 → 598
    Ig; Immunoglobulin domain

  3. XM_038427132.1 → XP_038283060.1  contactin-3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KR13, A0A8I3N3E2, A0A8P0PB45
    Related
    ENSCAFP00845009187.1, ENSCAFT00845011770.1
    Conserved Domains (3) summary
    cd00063
    Location:552 → 649
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:452 → 458
    Ig; Ig strand A [structural motif]
    cl11960
    Location:452 → 552
    Ig; Immunoglobulin domain

  4. XM_038427134.1 → XP_038283062.1  contactin-3 isoform X4

    Conserved Domains (3) summary
    cd00063
    Location:377 → 474
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:277 → 283
    Ig; Ig strand A [structural motif]
    cl11960
    Location:277 → 377
    Ig; Immunoglobulin domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049280.1 Alternate UMICH_Zoey_3.1

    Range
    17420511..17748589
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038502891.1 → XP_038358819.1  contactin-3 isoform X1

    Conserved Domains (3) summary
    cd00063
    Location:598 → 695
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:498 → 504
    Ig; Ig strand A [structural motif]
    cl11960
    Location:498 → 598
    Ig; Immunoglobulin domain

  2. XM_038502893.1 → XP_038358821.1  contactin-3 isoform X3

    Conserved Domains (4) summary
    smart00060
    Location:598 → 659
    FN3; Fibronectin type 3 domain
    cd00063
    Location:755 → 847
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:498 → 504
    Ig; Ig strand A [structural motif]
    cl11960
    Location:498 → 598
    Ig; Immunoglobulin domain

  3. XM_038502892.1 → XP_038358820.1  contactin-3 isoform X2

    Conserved Domains (3) summary
    cd00063
    Location:552 → 649
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:452 → 458
    Ig; Ig strand A [structural motif]
    cl11960
    Location:452 → 552
    Ig; Immunoglobulin domain

  4. XM_038502894.1 → XP_038358822.1  contactin-3 isoform X4

    Conserved Domains (3) summary
    cd00063
    Location:377 → 474
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:277 → 283
    Ig; Ig strand A [structural motif]
    cl11960
    Location:277 → 377
    Ig; Immunoglobulin domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

    Range
    17766588..18093543
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038629960.1 → XP_038485888.1  contactin-3 isoform X1

    Conserved Domains (3) summary
    cd00063
    Location:598 → 695
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:498 → 504
    Ig; Ig strand A [structural motif]
    cl11960
    Location:498 → 598
    Ig; Immunoglobulin domain

  2. XM_038629962.1 → XP_038485890.1  contactin-3 isoform X3

    Conserved Domains (4) summary
    smart00060
    Location:598 → 659
    FN3; Fibronectin type 3 domain
    cd00063
    Location:755 → 847
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:498 → 504
    Ig; Ig strand A [structural motif]
    cl11960
    Location:498 → 598
    Ig; Immunoglobulin domain

  3. XM_038629961.1 → XP_038485889.1  contactin-3 isoform X2

    Conserved Domains (3) summary
    cd00063
    Location:552 → 649
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:452 → 458
    Ig; Ig strand A [structural motif]
    cl11960
    Location:452 → 552
    Ig; Immunoglobulin domain

  4. XM_038629963.1 → XP_038485891.1  contactin-3 isoform X4

    Conserved Domains (3) summary
    cd00063
    Location:377 → 474
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:277 → 283
    Ig; Ig strand A [structural motif]
    cl11960
    Location:277 → 377
    Ig; Immunoglobulin domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

    Range
    17825134..18154638
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038565832.1 → XP_038421760.1  contactin-3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KR13, A0A8C0QB83, A0A8I3RTF0
    Conserved Domains (3) summary
    cd00063
    Location:598 → 695
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:498 → 504
    Ig; Ig strand A [structural motif]
    cl11960
    Location:498 → 598
    Ig; Immunoglobulin domain

  2. XM_038565835.1 → XP_038421763.1  contactin-3 isoform X3

    UniProtKB/TrEMBL
    A0A8C0KR13, A0A8I3N1X8, A0A8P0NUV9
    Conserved Domains (4) summary
    smart00060
    Location:598 → 659
    FN3; Fibronectin type 3 domain
    cd00063
    Location:755 → 847
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:498 → 504
    Ig; Ig strand A [structural motif]
    cl11960
    Location:498 → 598
    Ig; Immunoglobulin domain

  3. XM_038565833.1 → XP_038421761.1  contactin-3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KR13, A0A8I3N3E2, A0A8P0PB45
    Conserved Domains (3) summary
    cd00063
    Location:552 → 649
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:452 → 458
    Ig; Ig strand A [structural motif]
    cl11960
    Location:452 → 552
    Ig; Immunoglobulin domain

  4. XM_038565836.1 → XP_038421764.1  contactin-3 isoform X4

    Conserved Domains (3) summary
    cd00063
    Location:377 → 474
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:277 → 283
    Ig; Ig strand A [structural motif]
    cl11960
    Location:277 → 377
    Ig; Immunoglobulin domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    17662587..17991269
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_533761.7 → XP_533761.4  contactin-3 isoform X1

    See identical proteins and their annotated locations for XP_533761.4

    UniProtKB/TrEMBL
    A0A8C0KR13, A0A8C0QB83, A0A8I3RTF0
    Conserved Domains (3) summary
    cd00063
    Location:598 → 695
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:498 → 504
    Ig; Ig strand A [structural motif]
    cl11960
    Location:498 → 598
    Ig; Immunoglobulin domain

  2. XM_038455804.1 → XP_038311732.1  contactin-3 isoform X3

    UniProtKB/TrEMBL
    A0A8C0KR13, A0A8I3N1X8, A0A8P0NUV9
    Conserved Domains (4) summary
    smart00060
    Location:598 → 659
    FN3; Fibronectin type 3 domain
    cd00063
    Location:755 → 847
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:498 → 504
    Ig; Ig strand A [structural motif]
    cl11960
    Location:498 → 598
    Ig; Immunoglobulin domain

  3. XM_014121696.3 → XP_013977171.1  contactin-3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KR13, A0A8I3N3E2, A0A8P0PB45
    Conserved Domains (3) summary
    cd00063
    Location:552 → 649
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:452 → 458
    Ig; Ig strand A [structural motif]
    cl11960
    Location:452 → 552
    Ig; Immunoglobulin domain

  4. XM_038455805.1 → XP_038311733.1  contactin-3 isoform X4

    Conserved Domains (3) summary
    cd00063
    Location:377 → 474
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:277 → 283
    Ig; Ig strand A [structural motif]
    cl11960
    Location:277 → 377
    Ig; Immunoglobulin domain
Nucleotide Protein
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