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LSM14A LSM14A mRNA processing body assembly factor [ Canis lupus familiaris (dog) ]

Gene ID: 476492, updated on 18-Sep-2024

Summary

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Official Symbol
LSM14Aprovided by VGNC
Official Full Name
LSM14A mRNA processing body assembly factorprovided by VGNC
Primary source
VGNC:VGNC:42841
See related
Ensembl:ENSCAFG00845004271
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See LSM14A in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 1 NC_051805.1 (118657288..118712897, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 1 NC_006583.4 (117459811..117515443, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 1 NC_049222.1 (118903023..118958439, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 1 NC_049261.1 (118218375..118273952, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 1 NC_049742.1 (117844503..117900061, complement)

Chromosome 1 - NC_051805.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111090839 Neighboring gene granule associated Rac and RHOG effector 1 Neighboring gene uncharacterized LOC119869793 Neighboring gene uncharacterized LOC111098298 Neighboring gene methyl-CpG-binding domain protein 4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in P-body assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in stress granule assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein LSM14 homolog A
Names
LSM14A, SCD6 homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051805.1 Reference ROS_Cfam_1.0

    Range
    118657288..118712897 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038657550.1 → XP_038513478.1  protein LSM14 homolog A isoform X3

    UniProtKB/TrEMBL
    A0A8C0M213, A0A8I3MSH3
    Related
    ENSCAFP00845006098.1, ENSCAFT00845007707.1
    Conserved Domains (2) summary
    pfam09532
    Location:276 → 384
    FDF; FDF domain
    cl00259
    Location:26 → 62
    Sm_like; Sm and related proteins

  2. XM_038657553.1 → XP_038513481.1  protein LSM14 homolog A isoform X6

    UniProtKB/TrEMBL
    A0A8C0M213, A0A8I3MSH3
    Conserved Domains (2) summary
    cd01736
    Location:4 → 77
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:232 → 340
    FDF; FDF domain

  3. XM_038657552.1 → XP_038513480.1  protein LSM14 homolog A isoform X5

    UniProtKB/TrEMBL
    A0A8C0M213, A0A8I3MSH3
    Conserved Domains (2) summary
    cd01736
    Location:4 → 77
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:232 → 340
    FDF; FDF domain

  4. XM_038657549.1 → XP_038513477.1  protein LSM14 homolog A isoform X2

    UniProtKB/TrEMBL
    A0A8C0L0C5, A0A8C0M0M8, A0A8C0Q9H9, A0A8I3MSI5
    Related
    ENSCAFP00845006095.1, ENSCAFT00845007704.1
    Conserved Domains (2) summary
    cd01736
    Location:4 → 77
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:291 → 399
    FDF; FDF domain

  5. XM_038657548.1 → XP_038513476.1  protein LSM14 homolog A isoform X1

    UniProtKB/TrEMBL
    A0A8C0L1Z6, A0A8C0M213, A0A8C0PXA9, A0A8I3MSH3, A0A8I3MX49
    Related
    ENSCAFP00845006076.1, ENSCAFT00845007684.1
    Conserved Domains (2) summary
    cd01736
    Location:4 → 77
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:291 → 399
    FDF; FDF domain

  6. XM_038657551.1 → XP_038513479.1  protein LSM14 homolog A isoform X4

    UniProtKB/TrEMBL
    A0A8C0M213, A0A8I3MSH3
    Related
    ENSCAFP00845006083.1, ENSCAFT00845007691.1
    Conserved Domains (2) summary
    pfam09532
    Location:268 → 376
    FDF; FDF domain
    cl00259
    Location:18 → 54
    Sm_like; Sm and related proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049261.1 Alternate UMICH_Zoey_3.1

    Range
    118218375..118273952 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038468638.1 → XP_038324566.1  protein LSM14 homolog A isoform X3

    Conserved Domains (2) summary
    pfam09532
    Location:276 → 384
    FDF; FDF domain
    cl00259
    Location:26 → 62
    Sm_like; Sm and related proteins

  2. XM_038468641.1 → XP_038324569.1  protein LSM14 homolog A isoform X6

    Conserved Domains (2) summary
    cd01736
    Location:4 → 77
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:232 → 340
    FDF; FDF domain

  3. XM_038468640.1 → XP_038324568.1  protein LSM14 homolog A isoform X5

    Conserved Domains (2) summary
    cd01736
    Location:4 → 77
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:232 → 340
    FDF; FDF domain

  4. XM_038468637.1 → XP_038324565.1  protein LSM14 homolog A isoform X2

    Conserved Domains (2) summary
    cd01736
    Location:4 → 77
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:291 → 399
    FDF; FDF domain

  5. XM_038468636.1 → XP_038324564.1  protein LSM14 homolog A isoform X1

    Conserved Domains (2) summary
    cd01736
    Location:4 → 77
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:291 → 399
    FDF; FDF domain

  6. XM_038468639.1 → XP_038324567.1  protein LSM14 homolog A isoform X4

    Conserved Domains (2) summary
    pfam09532
    Location:268 → 376
    FDF; FDF domain
    cl00259
    Location:18 → 54
    Sm_like; Sm and related proteins

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049742.1 Alternate UNSW_CanFamBas_1.0

    Range
    117844503..117900061 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038593688.1 → XP_038449616.1  protein LSM14 homolog A isoform X3

    Conserved Domains (2) summary
    pfam09532
    Location:276 → 384
    FDF; FDF domain
    cl00259
    Location:26 → 62
    Sm_like; Sm and related proteins

  2. XM_038593691.1 → XP_038449619.1  protein LSM14 homolog A isoform X6

    Conserved Domains (2) summary
    cd01736
    Location:4 → 77
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:232 → 340
    FDF; FDF domain

  3. XM_038593690.1 → XP_038449618.1  protein LSM14 homolog A isoform X5

    Conserved Domains (2) summary
    cd01736
    Location:4 → 77
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:232 → 340
    FDF; FDF domain

  4. XM_038593687.1 → XP_038449615.1  protein LSM14 homolog A isoform X2

    Conserved Domains (2) summary
    cd01736
    Location:4 → 77
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:291 → 399
    FDF; FDF domain

  5. XM_038593686.1 → XP_038449614.1  protein LSM14 homolog A isoform X1

    Conserved Domains (2) summary
    cd01736
    Location:4 → 77
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:291 → 399
    FDF; FDF domain

  6. XM_038593689.1 → XP_038449617.1  protein LSM14 homolog A isoform X4

    Conserved Domains (2) summary
    pfam09532
    Location:268 → 376
    FDF; FDF domain
    cl00259
    Location:18 → 54
    Sm_like; Sm and related proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049222.1 Alternate UU_Cfam_GSD_1.0

    Range
    118903023..118958439 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038529428.1 → XP_038385356.1  protein LSM14 homolog A isoform X3

    UniProtKB/TrEMBL
    A0A8C0M213, A0A8I3MSH3
    Conserved Domains (2) summary
    pfam09532
    Location:276 → 384
    FDF; FDF domain
    cl00259
    Location:26 → 62
    Sm_like; Sm and related proteins

  2. XM_038529430.1 → XP_038385358.1  protein LSM14 homolog A isoform X6

    UniProtKB/TrEMBL
    A0A8C0M213, A0A8I3MSH3
    Conserved Domains (2) summary
    cd01736
    Location:4 → 77
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:232 → 340
    FDF; FDF domain

  3. XM_038529429.1 → XP_038385357.1  protein LSM14 homolog A isoform X5

    UniProtKB/TrEMBL
    A0A8C0M213, A0A8I3MSH3
    Conserved Domains (2) summary
    cd01736
    Location:4 → 77
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:232 → 340
    FDF; FDF domain

  4. XM_038529427.1 → XP_038385355.1  protein LSM14 homolog A isoform X2

    UniProtKB/TrEMBL
    A0A8C0L0C5, A0A8C0M0M8, A0A8C0Q9H9, A0A8I3MSI5
    Conserved Domains (2) summary
    cd01736
    Location:4 → 77
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:291 → 399
    FDF; FDF domain

  5. XM_038529426.1 → XP_038385354.1  protein LSM14 homolog A isoform X1

    UniProtKB/TrEMBL
    A0A8C0L1Z6, A0A8C0M213, A0A8C0PXA9, A0A8I3MSH3, A0A8I3MX49
    Conserved Domains (2) summary
    cd01736
    Location:4 → 77
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:291 → 399
    FDF; FDF domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006583.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    117459811..117515443 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005616759.3 → XP_005616816.1  protein LSM14 homolog A isoform X3

    UniProtKB/TrEMBL
    A0A8C0M213, A0A8I3MSH3
    Conserved Domains (2) summary
    pfam09532
    Location:276 → 384
    FDF; FDF domain
    cl00259
    Location:26 → 62
    Sm_like; Sm and related proteins

  2. XM_038453465.1 → XP_038309393.1  protein LSM14 homolog A isoform X6

    UniProtKB/TrEMBL
    A0A8C0M213, A0A8I3MSH3
    Conserved Domains (2) summary
    cd01736
    Location:4 → 77
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:232 → 340
    FDF; FDF domain

  3. XM_038453464.1 → XP_038309392.1  protein LSM14 homolog A isoform X5

    UniProtKB/TrEMBL
    A0A8C0M213, A0A8I3MSH3
    Conserved Domains (2) summary
    cd01736
    Location:4 → 77
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:232 → 340
    FDF; FDF domain

  4. XM_038453459.1 → XP_038309387.1  protein LSM14 homolog A isoform X2

    UniProtKB/TrEMBL
    A0A8C0L0C5, A0A8C0M0M8, A0A8C0Q9H9, A0A8I3MSI5
    Conserved Domains (2) summary
    cd01736
    Location:4 → 77
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:291 → 399
    FDF; FDF domain

  5. XM_038453453.1 → XP_038309381.1  protein LSM14 homolog A isoform X1

    UniProtKB/TrEMBL
    A0A8C0L1Z6, A0A8C0M213, A0A8C0PXA9, A0A8I3MSH3, A0A8I3MX49
    Conserved Domains (2) summary
    cd01736
    Location:4 → 77
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:291 → 399
    FDF; FDF domain

  6. XM_005616761.2 → XP_005616818.1  protein LSM14 homolog A isoform X4

    UniProtKB/TrEMBL
    A0A8C0M213, A0A8I3MSH3
    Conserved Domains (2) summary
    pfam09532
    Location:268 → 376
    FDF; FDF domain
    cl00259
    Location:18 → 54
    Sm_like; Sm and related proteins
Nucleotide Protein
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