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PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component [ Canis lupus familiaris (dog) ]

Gene ID: 476464, updated on 17-Aug-2024

Summary

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Official Symbol
PAF1provided by VGNC
Official Full Name
PAF1 homolog, Paf1/RNA polymerase II complex componentprovided by VGNC
Primary source
VGNC:VGNC:111617
See related
Ensembl:ENSCAFG00845004690
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See PAF1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 1 NC_051805.1 (114428562..114433392)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 1 NC_006583.4 (113231301..113236124)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 1 NC_049222.1 (114615153..114619983)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 1 NC_049261.1 (113987276..113992103)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 1 NC_049742.1 (113620056..113624882)

Chromosome 1 - NC_051805.1Genomic Context describing neighboring genes Neighboring gene transfer RNA isoleucine (anticodon UAU) Neighboring gene ZFP36 ring finger protein Neighboring gene mediator complex subunit 29 Neighboring gene sterile alpha motif domain containing 4B Neighboring gene glia maturation factor gamma Neighboring gene leucine rich repeat and fibronectin type III domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cdc73/Paf1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA polymerase II-associated factor 1 homolog
Names
Paf1, RNA polymerase II associated factor, homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051805.1 Reference ROS_Cfam_1.0

    Range
    114428562..114433392
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038657020.1 → XP_038512948.1  RNA polymerase II-associated factor 1 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0YY27, A0A8I3MY63, A0A8P0N865
    Related
    ENSCAFP00845006593.1, ENSCAFT00845008379.1
    Conserved Domains (1) summary
    pfam03985
    Location:30 → 443
    Paf1

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049261.1 Alternate UMICH_Zoey_3.1

    Range
    113987276..113992103
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038468181.1 → XP_038324109.1  RNA polymerase II-associated factor 1 homolog isoform X2

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049742.1 Alternate UNSW_CanFamBas_1.0

    Range
    113620056..113624882
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038593198.1 → XP_038449126.1  RNA polymerase II-associated factor 1 homolog isoform X1

    Conserved Domains (1) summary
    pfam03985
    Location:30 → 443
    Paf1

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049222.1 Alternate UU_Cfam_GSD_1.0

    Range
    114615153..114619983
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038528922.1 → XP_038384850.1  RNA polymerase II-associated factor 1 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0YY27, A0A8I3MY63, A0A8P0N865
    Conserved Domains (1) summary
    pfam03985
    Location:30 → 443
    Paf1

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006583.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    113231301..113236124
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_533675.7 → XP_533675.2  RNA polymerase II-associated factor 1 homolog isoform X1

    See identical proteins and their annotated locations for XP_533675.2

    UniProtKB/TrEMBL
    A0A8C0YY27, A0A8I3MY63, A0A8P0N865
    Conserved Domains (1) summary
    pfam03985
    Location:30 → 443
    Paf1
Nucleotide Protein
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