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SLC66A2 solute carrier family 66 member 2 [ Canis lupus familiaris (dog) ]

Gene ID: 476157, updated on 17-Aug-2024

Summary

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Official Symbol
SLC66A2provided by VGNC
Official Full Name
solute carrier family 66 member 2provided by VGNC
Primary source
VGNC:VGNC:44935
See related
Ensembl:ENSCAFG00845000033
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
PQLC1
Orthologs
human mouse all
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Genomic context

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See SLC66A2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 1 NC_051805.1 (557987..603282)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 1 NC_006583.4 (1762104..1807174)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 1 NC_049222.1 (727548..772828)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 1 NC_049261.1 (610906..656174)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 1 NC_049742.1 (556341..601630)

Chromosome 1 - NC_051805.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111091658 Neighboring gene uncharacterized LOC111091673 Neighboring gene heat shock factor binding protein 1 like 1 Neighboring gene 40S ribosomal protein S17-like Neighboring gene potassium voltage-gated channel modifier subfamily G member 2 Neighboring gene CTD phosphatase subunit 1 Neighboring gene uncharacterized LOC119870433 Neighboring gene uncharacterized LOC111091841

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in phospholipid translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PQ-loop repeat-containing protein 1; solute carrier family 66 member 2
Names
PQ loop repeat containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051805.1 Reference ROS_Cfam_1.0

    Range
    557987..603282
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038653833.1 → XP_038509761.1  solute carrier family 66 member 2 isoform X5

    Conserved Domains (1) summary
    pfam04193
    Location:17 → 77
    PQ-loop; PQ loop repeat

  2. XM_038653830.1 → XP_038509758.1  solute carrier family 66 member 2 isoform X2

    Conserved Domains (1) summary
    pfam04193
    Location:17 → 77
    PQ-loop; PQ loop repeat

  3. XM_038653834.1 → XP_038509762.1  solute carrier family 66 member 2 isoform X6

    Conserved Domains (1) summary
    pfam04193
    Location:17 → 77
    PQ-loop; PQ loop repeat

  4. XM_038653828.1 → XP_038509756.1  solute carrier family 66 member 2 isoform X1

    Conserved Domains (1) summary
    pfam04193
    Location:196 → 256
    PQ-loop; PQ loop repeat

  5. XM_038653835.1 → XP_038509763.1  solute carrier family 66 member 2 isoform X7

    UniProtKB/TrEMBL
    A0A8C0PQT8, A0A8P0S5Y4
    Conserved Domains (1) summary
    pfam04193
    Location:17 → 77
    PQ-loop; PQ loop repeat

  6. XM_038653831.1 → XP_038509759.1  solute carrier family 66 member 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0RU88, A0A8I3M9N7
    Related
    ENSCAFP00845000032.1, ENSCAFT00845000047.1
    Conserved Domains (1) summary
    pfam04193
    Location:170 → 230
    PQ-loop; PQ loop repeat

  7. XM_038653832.1 → XP_038509760.1  solute carrier family 66 member 2 isoform X4

    UniProtKB/TrEMBL
    A0A8C0PJF3, A0A8P0T307
    Conserved Domains (1) summary
    pfam04193
    Location:152 → 212
    PQ-loop; PQ loop repeat

  8. XM_038653829.1 → XP_038509757.1  solute carrier family 66 member 2 isoform X1

    Conserved Domains (1) summary
    pfam04193
    Location:196 → 256
    PQ-loop; PQ loop repeat

RNA

  1. XR_005420798.1 RNA Sequence

  2. XR_005420797.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049261.1 Alternate UMICH_Zoey_3.1

    Range
    610906..656174
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038465115.1 → XP_038321043.1  solute carrier family 66 member 2 isoform X8

  2. XM_038465117.1 → XP_038321045.1  solute carrier family 66 member 2 isoform X7

    Conserved Domains (1) summary
    pfam04193
    Location:17 → 77
    PQ-loop; PQ loop repeat

  3. XM_038465113.1 → XP_038321041.1  solute carrier family 66 member 2 isoform X3

    Conserved Domains (1) summary
    pfam04193
    Location:170 → 230
    PQ-loop; PQ loop repeat

  4. XM_038465116.1 → XP_038321044.1  solute carrier family 66 member 2 isoform X4

    Conserved Domains (1) summary
    pfam04193
    Location:152 → 212
    PQ-loop; PQ loop repeat

  5. XM_038465114.1 → XP_038321042.1  solute carrier family 66 member 2 isoform X3

    Conserved Domains (1) summary
    pfam04193
    Location:170 → 230
    PQ-loop; PQ loop repeat

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049742.1 Alternate UNSW_CanFamBas_1.0

    Range
    556341..601630
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038590000.1 → XP_038445928.1  solute carrier family 66 member 2 isoform X5

    Conserved Domains (1) summary
    pfam04193
    Location:17 → 77
    PQ-loop; PQ loop repeat

  2. XM_038589997.1 → XP_038445925.1  solute carrier family 66 member 2 isoform X2

    Conserved Domains (1) summary
    pfam04193
    Location:17 → 77
    PQ-loop; PQ loop repeat

  3. XM_038590001.1 → XP_038445929.1  solute carrier family 66 member 2 isoform X6

    Conserved Domains (1) summary
    pfam04193
    Location:17 → 77
    PQ-loop; PQ loop repeat

  4. XM_038589995.1 → XP_038445923.1  solute carrier family 66 member 2 isoform X1

    Conserved Domains (1) summary
    pfam04193
    Location:196 → 256
    PQ-loop; PQ loop repeat

  5. XM_038590002.1 → XP_038445930.1  solute carrier family 66 member 2 isoform X7

    Conserved Domains (1) summary
    pfam04193
    Location:17 → 77
    PQ-loop; PQ loop repeat

  6. XM_038589998.1 → XP_038445926.1  solute carrier family 66 member 2 isoform X3

    Conserved Domains (1) summary
    pfam04193
    Location:170 → 230
    PQ-loop; PQ loop repeat

  7. XM_038589999.1 → XP_038445927.1  solute carrier family 66 member 2 isoform X4

    Conserved Domains (1) summary
    pfam04193
    Location:152 → 212
    PQ-loop; PQ loop repeat

  8. XM_038589996.1 → XP_038445924.1  solute carrier family 66 member 2 isoform X1

    Conserved Domains (1) summary
    pfam04193
    Location:196 → 256
    PQ-loop; PQ loop repeat

RNA

  1. XR_005387845.1 RNA Sequence

  2. XR_005387844.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049222.1 Alternate UU_Cfam_GSD_1.0

    Range
    727548..772828
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038525711.1 → XP_038381639.1  solute carrier family 66 member 2 isoform X5

    Conserved Domains (1) summary
    pfam04193
    Location:17 → 77
    PQ-loop; PQ loop repeat

  2. XM_038525708.1 → XP_038381636.1  solute carrier family 66 member 2 isoform X2

    Conserved Domains (1) summary
    pfam04193
    Location:17 → 77
    PQ-loop; PQ loop repeat

  3. XM_038525712.1 → XP_038381640.1  solute carrier family 66 member 2 isoform X6

    Conserved Domains (1) summary
    pfam04193
    Location:17 → 77
    PQ-loop; PQ loop repeat

  4. XM_038525706.1 → XP_038381634.1  solute carrier family 66 member 2 isoform X1

    Conserved Domains (1) summary
    pfam04193
    Location:196 → 256
    PQ-loop; PQ loop repeat

  5. XM_038525713.1 → XP_038381641.1  solute carrier family 66 member 2 isoform X7

    UniProtKB/TrEMBL
    A0A8C0PQT8, A0A8P0S5Y4
    Conserved Domains (1) summary
    pfam04193
    Location:17 → 77
    PQ-loop; PQ loop repeat

  6. XM_038525709.1 → XP_038381637.1  solute carrier family 66 member 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0RU88, A0A8I3M9N7
    Conserved Domains (1) summary
    pfam04193
    Location:170 → 230
    PQ-loop; PQ loop repeat

  7. XM_038525710.1 → XP_038381638.1  solute carrier family 66 member 2 isoform X4

    UniProtKB/TrEMBL
    A0A8C0PJF3, A0A8P0T307
    Conserved Domains (1) summary
    pfam04193
    Location:152 → 212
    PQ-loop; PQ loop repeat

  8. XM_038525707.1 → XP_038381635.1  solute carrier family 66 member 2 isoform X1

    Conserved Domains (1) summary
    pfam04193
    Location:196 → 256
    PQ-loop; PQ loop repeat

RNA

  1. XR_005353260.1 RNA Sequence

  2. XR_005353259.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006583.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    1762104..1807174
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038462915.1 → XP_038318843.1  solute carrier family 66 member 2 isoform X5

    Conserved Domains (1) summary
    pfam04193
    Location:17 → 77
    PQ-loop; PQ loop repeat

  2. XM_038462822.1 → XP_038318750.1  solute carrier family 66 member 2 isoform X2

    Conserved Domains (1) summary
    pfam04193
    Location:17 → 77
    PQ-loop; PQ loop repeat

  3. XM_038462930.1 → XP_038318858.1  solute carrier family 66 member 2 isoform X6

    Conserved Domains (1) summary
    pfam04193
    Location:17 → 77
    PQ-loop; PQ loop repeat

  4. XM_038462772.1 → XP_038318700.1  solute carrier family 66 member 2 isoform X1

    Conserved Domains (1) summary
    pfam04193
    Location:196 → 256
    PQ-loop; PQ loop repeat

  5. XM_038462965.1 → XP_038318893.1  solute carrier family 66 member 2 isoform X7

    UniProtKB/TrEMBL
    A0A8C0PQT8, A0A8P0S5Y4
    Conserved Domains (1) summary
    pfam04193
    Location:17 → 77
    PQ-loop; PQ loop repeat

  6. XM_005615278.3 → XP_005615335.3  solute carrier family 66 member 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0RU88, A0A8I3M9N7
    Conserved Domains (1) summary
    pfam04193
    Location:170 → 230
    PQ-loop; PQ loop repeat

  7. XM_038462886.1 → XP_038318814.1  solute carrier family 66 member 2 isoform X4

    UniProtKB/TrEMBL
    A0A8C0PJF3, A0A8P0T307
    Conserved Domains (1) summary
    pfam04193
    Location:152 → 212
    PQ-loop; PQ loop repeat

  8. XM_038462803.1 → XP_038318731.1  solute carrier family 66 member 2 isoform X1

    Conserved Domains (1) summary
    pfam04193
    Location:196 → 256
    PQ-loop; PQ loop repeat

RNA

  1. XR_005317720.1 RNA Sequence

  2. XR_005317666.1 RNA Sequence

Nucleotide Protein
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