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SF3B2 splicing factor 3b subunit 2 [ Canis lupus familiaris (dog) ]

Gene ID: 476015, updated on 17-Aug-2024

Summary

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Official Symbol
SF3B2provided by VGNC
Official Full Name
splicing factor 3b subunit 2provided by VGNC
Primary source
VGNC:VGNC:46070
See related
Ensembl:ENSCAFG00845014133
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See SF3B2 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
22
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 18 NC_051822.1 (52236302..52250785, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 18 NC_006600.4 (49806472..49820946, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 18 NC_049239.1 (51700526..51715001, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 18 NC_049278.1 (51336299..51350773, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 18 NC_049759.1 (50910523..50925010, complement)

Chromosome 18 - NC_051822.1Genomic Context describing neighboring genes Neighboring gene kinesin light chain 2 Neighboring gene phosphofurin acidic cluster sorting protein 1 Neighboring gene uncharacterized LOC119864265 Neighboring gene galactose-3-O-sulfotransferase 3 Neighboring gene cation channel sperm associated 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: splicing factor 3B subunit 2; splicing factor 3B subunit 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051822.1 Reference ROS_Cfam_1.0

    Range
    52236302..52250785 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038424920.1 → XP_038280848.1  splicing factor 3B subunit 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0SNN1, A0A8I3NV69, A0A8P0SI44
    Related
    ENSCAFP00845019900.1, ENSCAFT00845025292.1
    Conserved Domains (3) summary
    COG5182
    Location:441 → 705
    CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
    pfam02037
    Location:24 → 57
    SAP; SAP domain
    pfam04037
    Location:470 → 595
    DUF382; Domain of unknown function (DUF382)

  2. XM_038424921.1 → XP_038280849.1  splicing factor 3B subunit 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0SNN1
    Conserved Domains (3) summary
    COG5182
    Location:441 → 705
    CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
    pfam02037
    Location:24 → 57
    SAP; SAP domain
    pfam04037
    Location:470 → 595
    DUF382; Domain of unknown function (DUF382)

  3. XM_038424919.1 → XP_038280847.1  splicing factor 3B subunit 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KR88, A0A8C0NVF2, A0A8C0SNN1
    Conserved Domains (3) summary
    COG5182
    Location:442 → 706
    CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
    pfam02037
    Location:24 → 57
    SAP; SAP domain
    pfam04037
    Location:471 → 596
    DUF382; Domain of unknown function (DUF382)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049278.1 Alternate UMICH_Zoey_3.1

    Range
    51336299..51350773 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038501157.1 → XP_038357085.1  LOW QUALITY PROTEIN: splicing factor 3B subunit 2 isoform X1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049759.1 Alternate UNSW_CanFamBas_1.0

    Range
    50910523..50925010 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038627983.1 → XP_038483911.1  splicing factor 3B subunit 2 isoform X2

    Conserved Domains (3) summary
    COG5182
    Location:441 → 705
    CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
    pfam02037
    Location:24 → 57
    SAP; SAP domain
    pfam04037
    Location:470 → 595
    DUF382; Domain of unknown function (DUF382)

  2. XM_038627984.1 → XP_038483912.1  splicing factor 3B subunit 2 isoform X3

    Conserved Domains (3) summary
    COG5182
    Location:441 → 705
    CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
    pfam02037
    Location:24 → 57
    SAP; SAP domain
    pfam04037
    Location:470 → 595
    DUF382; Domain of unknown function (DUF382)

  3. XM_038627982.1 → XP_038483910.1  splicing factor 3B subunit 2 isoform X1

    Conserved Domains (3) summary
    COG5182
    Location:442 → 706
    CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
    pfam02037
    Location:24 → 57
    SAP; SAP domain
    pfam04037
    Location:471 → 596
    DUF382; Domain of unknown function (DUF382)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049239.1 Alternate UU_Cfam_GSD_1.0

    Range
    51700526..51715001 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038563859.1 → XP_038419787.1  splicing factor 3B subunit 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0SNN1, A0A8I3NV69, A0A8P0SI44
    Conserved Domains (3) summary
    COG5182
    Location:441 → 705
    CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
    pfam02037
    Location:24 → 57
    SAP; SAP domain
    pfam04037
    Location:470 → 595
    DUF382; Domain of unknown function (DUF382)

  2. XM_038563860.1 → XP_038419788.1  splicing factor 3B subunit 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0SNN1
    Conserved Domains (3) summary
    COG5182
    Location:441 → 705
    CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
    pfam02037
    Location:24 → 57
    SAP; SAP domain
    pfam04037
    Location:470 → 595
    DUF382; Domain of unknown function (DUF382)

  3. XM_038563858.1 → XP_038419786.1  splicing factor 3B subunit 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KR88, A0A8C0NVF2, A0A8C0SNN1
    Conserved Domains (3) summary
    COG5182
    Location:442 → 706
    CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
    pfam02037
    Location:24 → 57
    SAP; SAP domain
    pfam04037
    Location:471 → 596
    DUF382; Domain of unknown function (DUF382)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006600.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    49806472..49820946 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022405630.2 → XP_022261338.1  splicing factor 3B subunit 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0SNN1, A0A8I3NV69, A0A8P0SI44
    Conserved Domains (3) summary
    COG5182
    Location:441 → 705
    CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
    pfam02037
    Location:24 → 57
    SAP; SAP domain
    pfam04037
    Location:470 → 595
    DUF382; Domain of unknown function (DUF382)

  2. XM_005631443.4 → XP_005631500.1  splicing factor 3B subunit 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0SNN1
    Conserved Domains (3) summary
    COG5182
    Location:441 → 705
    CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
    pfam02037
    Location:24 → 57
    SAP; SAP domain
    pfam04037
    Location:470 → 595
    DUF382; Domain of unknown function (DUF382)

  3. XM_533224.7 → XP_533224.2  splicing factor 3B subunit 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KR88, A0A8C0NVF2, A0A8C0SNN1
    Conserved Domains (3) summary
    COG5182
    Location:442 → 706
    CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
    pfam02037
    Location:24 → 57
    SAP; SAP domain
    pfam04037
    Location:471 → 596
    DUF382; Domain of unknown function (DUF382)
Nucleotide Protein
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