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SF3B6 splicing factor 3b subunit 6 [ Canis lupus familiaris (dog) ]

Gene ID: 475682, updated on 17-Aug-2024

Summary

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Official Symbol
SF3B6provided by VGNC
Official Full Name
splicing factor 3b subunit 6provided by VGNC
Primary source
VGNC:VGNC:46074
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
SF3B14
Orthologs
human mouse all
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Genomic context

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See SF3B6 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
4
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 17 NC_051821.1 (18822915..18833664, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 17 NC_006599.4 (18447236..18457834, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 17 NC_049238.1 (18609656..18620388, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 17 NC_049758.1 (18568742..18579681, complement)

Chromosome 17 - NC_051821.1Genomic Context describing neighboring genes Neighboring gene WD repeat and coiled coil containing Neighboring gene 60S ribosomal protein L32-like Neighboring gene FKBP prolyl isomerase 1B Neighboring gene tumor protein p53 inducible protein 3 Neighboring gene profilin family member 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3B subunit 6
Names
splicing factor 3B, 14 kDa subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051821.1 Reference ROS_Cfam_1.0

    Range
    18822915..18833664 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038690848.1 → XP_038546776.1  splicing factor 3B subunit 6 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LP02, A0A8C0QGX1, A0A8I3PC35
    Conserved Domains (1) summary
    cd12241
    Location:17 → 93
    RRM_SF3B14; RNA recognition motif (RRM) found in pre-mRNA branch site protein p14 (SF3B14) and similar proteins

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049758.1 Alternate UNSW_CanFamBas_1.0

    Range
    18568742..18579681 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038624940.1 → XP_038480868.1  splicing factor 3B subunit 6 isoform X1

    Conserved Domains (1) summary
    cd12241
    Location:17 → 93
    RRM_SF3B14; RNA recognition motif (RRM) found in pre-mRNA branch site protein p14 (SF3B14) and similar proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049238.1 Alternate UU_Cfam_GSD_1.0

    Range
    18609656..18620388 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038560910.1 → XP_038416838.1  splicing factor 3B subunit 6 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LP02, A0A8C0QGX1, A0A8I3PC35
    Conserved Domains (1) summary
    cd12241
    Location:17 → 93
    RRM_SF3B14; RNA recognition motif (RRM) found in pre-mRNA branch site protein p14 (SF3B14) and similar proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006599.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    18447236..18457834 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_532889.6 → XP_532889.1  splicing factor 3B subunit 6 isoform X2

    See identical proteins and their annotated locations for XP_532889.1

    UniProtKB/TrEMBL
    A0A8C0LP02, A0A8C0QGX1, A0A8I3PC35
    Conserved Domains (1) summary
    cd12241
    Location:17 → 93
    RRM_SF3B14; RNA recognition motif (RRM) found in pre-mRNA branch site protein p14 (SF3B14) and similar proteins
Nucleotide Protein
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