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SLC44A1 solute carrier family 44 member 1 [ Canis lupus familiaris (dog) ]

Gene ID: 474792, updated on 17-Aug-2024

Summary

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Official Symbol
SLC44A1provided by VGNC
Official Full Name
solute carrier family 44 member 1provided by VGNC
Primary source
VGNC:VGNC:46417
See related
Ensembl:ENSCAFG00845010837
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See SLC44A1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
17
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 11 NC_051815.1 (62256080..62448662)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 11 NC_006593.4 (59582008..59773782)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 11 NC_049232.1 (61487297..61679198)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 11 NC_049271.1 (60775818..60926372)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 11 NC_049752.1 (60794294..60986332)

Chromosome 11 - NC_051815.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC111098116 Neighboring gene uncharacterized LOC119873959 Neighboring gene uncharacterized LOC119873961 Neighboring gene fibronectin type III and SPRY domain containing 1 like Neighboring gene translation initiation factor IF-2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables choline transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in choline transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
choline transporter-like protein 1; LOW QUALITY PROTEIN: choline transporter-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051815.1 Reference ROS_Cfam_1.0

    Range
    62256080..62448662
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038682340.1 → XP_038538268.1  choline transporter-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0NIL1, A0A8C0QPF0, A0A8I3NBU9
    Related
    ENSCAFP00845014938.1, ENSCAFT00845019122.1
    Conserved Domains (1) summary
    pfam04515
    Location:294 → 604
    Choline_transpo; Plasma-membrane choline transporter

  2. XM_038682339.1 → XP_038538267.1  choline transporter-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0NIV5, A0A8C0QLU7, A0A8I3NGK0
    Related
    ENSCAFP00845014987.1, ENSCAFT00845019184.1
    Conserved Domains (1) summary
    pfam04515
    Location:294 → 604
    Choline_transpo; Plasma-membrane choline transporter

  3. XM_038682338.1 → XP_038538266.1  choline transporter-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L715
    Related
    ENSCAFP00845015051.1, ENSCAFT00845019261.1
    Conserved Domains (1) summary
    pfam04515
    Location:294 → 604
    Choline_transpo; Plasma-membrane choline transporter

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049271.1 Alternate UMICH_Zoey_3.1

    Range
    60775818..60926372
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038490882.1 → XP_038346810.1  LOW QUALITY PROTEIN: choline transporter-like protein 1 isoform X2

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049752.1 Alternate UNSW_CanFamBas_1.0

    Range
    60794294..60986332
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038616889.1 → XP_038472817.1  choline transporter-like protein 1 isoform X3

    Conserved Domains (1) summary
    pfam04515
    Location:294 → 604
    Choline_transpo; Plasma-membrane choline transporter

  2. XM_038616888.1 → XP_038472816.1  choline transporter-like protein 1 isoform X2

    Conserved Domains (1) summary
    pfam04515
    Location:294 → 604
    Choline_transpo; Plasma-membrane choline transporter

  3. XM_038616887.1 → XP_038472815.1  choline transporter-like protein 1 isoform X1

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049232.1 Alternate UU_Cfam_GSD_1.0

    Range
    61487297..61679198
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038553006.1 → XP_038408934.1  choline transporter-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0NIL1, A0A8C0QPF0, A0A8I3NBU9
    Conserved Domains (1) summary
    pfam04515
    Location:294 → 604
    Choline_transpo; Plasma-membrane choline transporter

  2. XM_038553005.1 → XP_038408933.1  choline transporter-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0NIV5, A0A8C0QLU7, A0A8I3NGK0
    Conserved Domains (1) summary
    pfam04515
    Location:294 → 604
    Choline_transpo; Plasma-membrane choline transporter

  3. XM_038553004.1 → XP_038408932.1  choline transporter-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L715

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    59582008..59773782
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038652988.1 → XP_038508916.1  choline transporter-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0NIL1, A0A8C0QPF0, A0A8I3NBU9
    Conserved Domains (1) summary
    pfam04515
    Location:294 → 604
    Choline_transpo; Plasma-membrane choline transporter

  2. XM_038652984.1 → XP_038508912.1  choline transporter-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0NIV5, A0A8C0QLU7, A0A8I3NGK0
    Conserved Domains (1) summary
    pfam04515
    Location:294 → 604
    Choline_transpo; Plasma-membrane choline transporter

  3. XM_005626890.3 → XP_005626947.1  choline transporter-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L715
    Conserved Domains (1) summary
    pfam04515
    Location:294 → 604
    Choline_transpo; Plasma-membrane choline transporter
Nucleotide Protein
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