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NCBP1 nuclear cap binding protein subunit 1 [ Canis lupus familiaris (dog) ]

Gene ID: 474772, updated on 17-Aug-2024

Summary

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Official Symbol
NCBP1provided by VGNC
Official Full Name
nuclear cap binding protein subunit 1provided by VGNC
Primary source
VGNC:VGNC:43645
See related
Ensembl:ENSCAFG00845014451
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See NCBP1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
23
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 11 NC_051815.1 (56050831..56087132)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 11 NC_006593.4 (53372453..53408740)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 11 NC_049232.1 (55273732..55310040)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 11 NC_049271.1 (54547195..54583482)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 11 NC_049752.1 (54577067..54613371)

Chromosome 11 - NC_051815.1Genomic Context describing neighboring genes Neighboring gene tropomodulin 1 Neighboring gene uncharacterized LOC106559495 Neighboring gene thiosulfate sulfurtransferase like domain containing 2 Neighboring gene XPA, DNA damage recognition and repair factor Neighboring gene uncharacterized LOC111098101 Neighboring gene uncharacterized LOC111098103 Neighboring gene uncharacterized LOC111098100

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA cap binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear cap binding complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear cap-binding protein subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051815.1 Reference ROS_Cfam_1.0

    Range
    56050831..56087132
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038682229.1 → XP_038538157.1  nuclear cap-binding protein subunit 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0M763, A0A8C0R3M7, A0A8I3NNY6
    Related
    ENSCAFP00845020390.1, ENSCAFT00845025874.1
    Conserved Domains (3) summary
    smart00543
    Location:28 → 240
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam09088
    Location:351 → 470
    MIF4G_like; MIF4G like
    pfam09090
    Location:485 → 760
    MIF4G_like_2; MIF4G like

  2. XM_038682230.1 → XP_038538158.1  nuclear cap-binding protein subunit 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0R3G5, A0A8C0R3M7
    Conserved Domains (3) summary
    smart00543
    Location:9 → 173
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam09088
    Location:284 → 403
    MIF4G_like; MIF4G like
    pfam09090
    Location:418 → 693
    MIF4G_like_2; MIF4G like

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049271.1 Alternate UMICH_Zoey_3.1

    Range
    54547195..54583482
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038490771.1 → XP_038346699.1  nuclear cap-binding protein subunit 1 isoform X1

    Conserved Domains (3) summary
    smart00543
    Location:28 → 240
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam09088
    Location:351 → 470
    MIF4G_like; MIF4G like
    pfam09090
    Location:485 → 760
    MIF4G_like_2; MIF4G like

  2. XM_038490772.1 → XP_038346700.1  nuclear cap-binding protein subunit 1 isoform X2

    Conserved Domains (3) summary
    smart00543
    Location:9 → 173
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam09088
    Location:284 → 403
    MIF4G_like; MIF4G like
    pfam09090
    Location:418 → 693
    MIF4G_like_2; MIF4G like

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049752.1 Alternate UNSW_CanFamBas_1.0

    Range
    54577067..54613371
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038616762.1 → XP_038472690.1  nuclear cap-binding protein subunit 1 isoform X1

    Conserved Domains (3) summary
    smart00543
    Location:28 → 240
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam09088
    Location:351 → 470
    MIF4G_like; MIF4G like
    pfam09090
    Location:485 → 760
    MIF4G_like_2; MIF4G like

  2. XM_038616763.1 → XP_038472691.1  nuclear cap-binding protein subunit 1 isoform X2

    Conserved Domains (3) summary
    smart00543
    Location:9 → 173
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam09088
    Location:284 → 403
    MIF4G_like; MIF4G like
    pfam09090
    Location:418 → 693
    MIF4G_like_2; MIF4G like

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049232.1 Alternate UU_Cfam_GSD_1.0

    Range
    55273732..55310040
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038552899.1 → XP_038408827.1  nuclear cap-binding protein subunit 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0M763, A0A8C0R3M7, A0A8I3NNY6
    Conserved Domains (3) summary
    smart00543
    Location:28 → 240
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam09088
    Location:351 → 470
    MIF4G_like; MIF4G like
    pfam09090
    Location:485 → 760
    MIF4G_like_2; MIF4G like

  2. XM_038552900.1 → XP_038408828.1  nuclear cap-binding protein subunit 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0R3G5, A0A8C0R3M7
    Conserved Domains (3) summary
    smart00543
    Location:9 → 173
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam09088
    Location:284 → 403
    MIF4G_like; MIF4G like
    pfam09090
    Location:418 → 693
    MIF4G_like_2; MIF4G like

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    53372453..53408740
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_532003.7 → XP_532003.2  nuclear cap-binding protein subunit 1 isoform X1

    See identical proteins and their annotated locations for XP_532003.2

    UniProtKB/TrEMBL
    A0A8C0M763, A0A8C0R3M7, A0A8I3NNY6
    Conserved Domains (3) summary
    smart00543
    Location:28 → 240
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam09088
    Location:351 → 470
    MIF4G_like; MIF4G like
    pfam09090
    Location:485 → 760
    MIF4G_like_2; MIF4G like

  2. XM_022425634.2 → XP_022281342.1  nuclear cap-binding protein subunit 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0R3G5, A0A8C0R3M7
    Conserved Domains (3) summary
    smart00543
    Location:9 → 173
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam09088
    Location:284 → 403
    MIF4G_like; MIF4G like
    pfam09090
    Location:418 → 693
    MIF4G_like_2; MIF4G like
Nucleotide Protein
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