U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PATR-DQA1 major histocompatibility complex, class II, DQ alpha 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 471974, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
PATR-DQA1
Gene description
major histocompatibility complex, class II, DQ alpha 1
Locus tag
CK820_G0006941
See related
Ensembl:ENSPTRG00000018017
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
MHC-DQA1
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PATR-DQA1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 5 NC_072403.2 (38523605..38538792)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 6 NC_072404.1 (38533019..38538799)

Chromosome 5 - NC_072403.2Genomic Context describing neighboring genes Neighboring gene HLA class II histocompatibility antigen, DR beta 3 chain Neighboring gene HLA class II histocompatibility antigen, DR beta 4 chain-like Neighboring gene major histocompatibility complex, class II, DQ beta 1 Neighboring gene HLA class II histocompatibility antigen, DQ beta 1 chain Neighboring gene uncharacterized LOC107975113

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Evolutionary relationships among the primate Mhc-DQA1 and DQA2 alleles. Kenter M, et al. Immunogenetics, 1992. PMID 1612647
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in antigen processing and presentation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MHC class II protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
HLA class II histocompatibility antigen, DQ alpha 1 chain
Names
HLA-DQA2
MHC class II protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072403.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    38523605..38538792
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063812368.1 → XP_063668438.1  HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X1

  2. XM_063812369.1 → XP_063668439.1  HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X1

  3. XM_003950795.5 → XP_003950844.1  HLA class II histocompatibility antigen, DQ alpha 1 chain isoform X2

    UniProtKB/TrEMBL
    A0A2C8CYU9, H2RBA7
    Related
    ENSPTRP00000055403.3
    Conserved Domains (3) summary
    cd05767
    Location:112 → 205
    IgC_MHC_II_alpha; Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    pfam00993
    Location:29 → 109
    MHC_II_alpha; Class II histocompatibility antigen, alpha domain
    pfam16196
    Location:202 → 254
    C1-set_C; C1-set C-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials