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NR3C1 nuclear receptor subfamily 3 group C member 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 471681, updated on 10-Oct-2024

Summary

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Official Symbol
NR3C1provided by VGNC
Official Full Name
nuclear receptor subfamily 3 group C member 1provided by VGNC
Primary source
VGNC:VGNC:4104
Locus tag
CK820_G0009966
See related
Ensembl:ENSPTRG00000017363
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See NR3C1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 4 NC_072402.2 (140994199..141149937, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 5 NC_072403.1 (141012277..141137357, complement)

Chromosome 4 - NC_072402.2Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 26 Neighboring gene uncharacterized LOC134810112 Neighboring gene uncharacterized LOC129144109 Neighboring gene uncharacterized LOC107974891 Neighboring gene large ribosomal subunit protein uL30-like 1 Neighboring gene U7 small nuclear RNA Neighboring gene uncharacterized LOC112209241

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables estrogen response element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear glucocorticoid receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables steroid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucocorticoid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear receptor-mediated glucocorticoid signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucocorticoid receptor
Names
nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072402.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    140994199..141149937 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063811547.1 → XP_063667617.1  glucocorticoid receptor isoform X1

    UniProtKB/TrEMBL
    A0A2J8NIZ7

  2. XM_063811546.1 → XP_063667616.1  glucocorticoid receptor isoform X1

    UniProtKB/TrEMBL
    A0A2J8NIZ7

  3. XM_009449876.5 → XP_009448151.2  glucocorticoid receptor isoform X1

    UniProtKB/TrEMBL
    A0A2J8NIZ7, H2QRP6
    Conserved Domains (3) summary
    cd07076
    Location:532 → 778
    NR_LBD_GR; Ligand binding domain of the glucocorticoid receptor, a member of the nuclear receptor superfamily
    cd07172
    Location:417 → 495
    NR_DBD_GR_PR; DNA-binding domain of glucocorticoid receptor (GR) is composed of two C4-type zinc fingers
    pfam02155
    Location:26 → 401
    GCR; Glucocorticoid receptor

  4. XM_063811548.1 → XP_063667618.1  glucocorticoid receptor isoform X2

    UniProtKB/TrEMBL
    A0A2J8NJ02, A0A803KHK7, K7DF61

  5. XM_063811545.1 → XP_063667615.1  glucocorticoid receptor isoform X1

    UniProtKB/TrEMBL
    A0A2J8NIZ7

  6. XM_009449877.5 → XP_009448152.2  glucocorticoid receptor isoform X1

    UniProtKB/TrEMBL
    A0A2J8NIZ7, H2QRP6
    Conserved Domains (3) summary
    cd07076
    Location:532 → 778
    NR_LBD_GR; Ligand binding domain of the glucocorticoid receptor, a member of the nuclear receptor superfamily
    cd07172
    Location:417 → 495
    NR_DBD_GR_PR; DNA-binding domain of glucocorticoid receptor (GR) is composed of two C4-type zinc fingers
    pfam02155
    Location:26 → 401
    GCR; Glucocorticoid receptor
Nucleotide Protein
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