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LRP2BP LRP2 binding protein [ Pan troglodytes (chimpanzee) ]

Gene ID: 471371, updated on 10-Oct-2024

Summary

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Official Symbol
LRP2BPprovided by VGNC
Official Full Name
LRP2 binding proteinprovided by VGNC
Primary source
VGNC:VGNC:13018
Locus tag
CK820_G0031715
See related
Ensembl:ENSPTRG00000016650
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See LRP2BP in Genome Data Viewer
Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 3 NC_072401.2 (187008666..187036384, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 4 NC_072402.1 (186968076..186995794, complement)

Chromosome 3 - NC_072401.2Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 4 Neighboring gene cilia and flagella associated protein 97 Neighboring gene sorting nexin 25 Neighboring gene uncharacterized LOC134809821 Neighboring gene ankyrin repeat domain 37 Neighboring gene UFM1 specific peptidase 2 Neighboring gene cilia and flagella associated protein 96 Neighboring gene uncharacterized LOC134809820 Neighboring gene coiled-coil domain containing 110

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LRP2-binding protein
Names
ankyrin repeat domain-containing protein 37

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001280149.1 → NP_001267078.1  LRP2-binding protein

    See identical proteins and their annotated locations for NP_001267078.1

    Status: PROVISIONAL

    Source sequence(s)
    AK305959
    UniProtKB/TrEMBL
    A0A2J8L855, G2HGU5
    Related
    ENSPTRP00000044994.4, ENSPTRT00000050670.5
    Conserved Domains (3) summary
    smart00671
    Location:208 → 242
    SEL1; Sel1-like repeats
    COG0790
    Location:61 → 254
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:109 → 145
    SLR; SLR repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072401.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    187008666..187036384 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054682685.1 → XP_054538660.1  LRP2-binding protein isoform X2

  2. XM_016951021.2 → XP_016806510.1  LRP2-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A2J8L854, A0A2J8L855, A0A6D2XDW8, H2R367
    Conserved Domains (2) summary
    COG0790
    Location:61 → 254
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:109 → 145
    SLR; SLR repeat [structural motif]

  3. XM_054682686.1 → XP_054538661.1  LRP2-binding protein isoform X2

  4. XM_063808456.1 → XP_063664526.1  LRP2-binding protein isoform X2

  5. XM_063808457.1 → XP_063664527.1  LRP2-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A2J8L854, A0A6D2XDW8, H2R367

  6. XM_009448540.4 → XP_009446815.1  LRP2-binding protein isoform X1

    See identical proteins and their annotated locations for XP_009446815.1

    UniProtKB/TrEMBL
    A0A2J8L854, A0A2J8L855, A0A6D2XDW8, H2R367
    Conserved Domains (2) summary
    COG0790
    Location:61 → 254
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:109 → 145
    SLR; SLR repeat [structural motif]

  7. XM_016951022.3 → XP_016806511.1  LRP2-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A2J8L855
    Conserved Domains (2) summary
    COG0790
    Location:61 → 253
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:151 → 184
    SLR; SLR repeat [structural motif]

  8. XM_016951020.3 → XP_016806509.1  LRP2-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A2J8L854, A0A2J8L855, A0A6D2XDW8, H2R367
    Conserved Domains (2) summary
    COG0790
    Location:61 → 254
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:109 → 145
    SLR; SLR repeat [structural motif]

  9. XM_054682687.2 → XP_054538662.1  LRP2-binding protein isoform X3

  10. XM_054682688.2 → XP_054538663.1  LRP2-binding protein isoform X4

Nucleotide Protein
Heading Accession and Version

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