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ACLA_068510 C6 finger domain protein, putative [ Aspergillus clavatus NRRL 1 ]

Gene ID: 4707944, updated on 31-Oct-2024

Summary

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Gene symbol
ACLA_068510
Gene description
C6 finger domain protein, putative
Locus tag
ACLA_068510
See related
FungiDB:ACLA_068510; VEuPathDB:ACLA_068510
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus clavatus NRRL 1 (strain: NRRL 1, type-material: culture from type material of Aspergillus clavatus)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Fumigati
Orthologs
Aspergillus fumigatus all
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Genomic context

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See ACLA_068510 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
3

NW_001517108.1Genomic Context describing neighboring genes Neighboring gene double-strand-break repair protein rad21 Neighboring gene MFS transporter, putative Neighboring gene Riboflavin kinase, putative Neighboring gene dienelactone hydrolase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001517108.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus. Fedorova ND, et al. PLoS Genet, 2008 Apr 11. PMID 18404212, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C6 finger domain protein, putative
XP_001275249.1
  • encoded by transcript ACLA_068510A
    predicted by EVM2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001517108.1 Reference assembly

    Range
    217870..220255
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001275248.1 → XP_001275249.1  C6 finger domain protein, putative [Aspergillus clavatus NRRL 1]

    See identical proteins and their annotated locations for XP_001275249.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A1C602
    Conserved Domains (1) summary
    cd00067
    Location:69 → 98
    GAL4; GAL4-like Zn2Cys6 binuclear cluster DNA-binding domain; found in transcription regulators like GAL4. Domain consists of two helices organized around a Zn(2)Cys(6 )motif; Binds to sequences containing 2 DNA half sites comprised of 3-5 C/G combinations
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A1C602.1

Gene LinkOut

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Molecular Biology Databases
Research Materials