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ITGA9 integrin subunit alpha 9 [ Pan troglodytes (chimpanzee) ]

Gene ID: 470789, updated on 17-Aug-2024

Summary

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Official Symbol
ITGA9provided by VGNC
Official Full Name
integrin subunit alpha 9provided by VGNC
Primary source
VGNC:VGNC:6346
Locus tag
CK820_G0009070
See related
Ensembl:ENSPTRG00000014748
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See ITGA9 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 2 NC_086015.1 (41454403..41829002)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 3 NC_072401.1 (41454069..41829795)

Chromosome 2 - NC_086015.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129143611 Neighboring gene APRG1 tumor suppressor candidate Neighboring gene U7 small nuclear RNA Neighboring gene uncharacterized LOC104005501 Neighboring gene CTD small phosphatase like Neighboring gene microRNA mir-26a-1 Neighboring gene villin like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin alpha-9
Names
integrin, alpha 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_086015.1 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    41454403..41829002
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_526172.9 → XP_526172.3  integrin alpha-9 isoform X1

    UniProtKB/TrEMBL
    A0A2J8NQ85, A0A6D2WQN4, H2QMA4
    Related
    ENSPTRP00000025436.3
    Conserved Domains (2) summary
    smart00191
    Location:361 → 414
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam08441
    Location:459 → 903
    Integrin_alpha2; Integrin alpha

  2. XM_054681668.2 → XP_054537643.1  integrin alpha-9 isoform X4

  3. XM_054681665.2 → XP_054537640.1  integrin alpha-9 isoform X2

  4. XM_054681666.2 → XP_054537641.1  integrin alpha-9 isoform X3

  5. XM_054681667.2 → XP_054537642.1  integrin alpha-9 isoform X5

  6. XM_063805540.1 → XP_063661610.1  integrin alpha-9 isoform X6

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials