SGPP2 sphingosine-1-phosphate phosphatase 2 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: SGPP2provided by VGNC
Official Full Name: sphingosine-1-phosphate phosphatase 2provided by VGNC
Primary source: VGNC:VGNC:14435
Locus tag: CK820_G0010995
See related: Ensembl:ENSPTRG00000012972
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 13

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	13	NC_072411.2 (124677317..124812829)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	2B	NC_072400.1 (124588472..124723986)

Chromosome 13 - NC_072411.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

SHGC-141517 (e-PCR)
- UniSTS:183296

D11S2921 (e-PCR)
- UniSTS:152074

SHGC-83242 (e-PCR)
- UniSTS:101135

NoName (e-PCR)
- UniSTS:490006

D8S2279 (e-PCR)
- UniSTS:473907

sY3084 (e-PCR)
- UniSTS:515126

SHGC-146400 (e-PCR)
- UniSTS:172600

SHGC-153751 (e-PCR)
- UniSTS:183371

RH70378 (e-PCR)
- UniSTS:35405

RH122791 (e-PCR)
- UniSTS:135026

G63032 (e-PCR)
- UniSTS:140157

1888 (e-PCR)
- UniSTS:38063

A005D23 (e-PCR)
- UniSTS:61416

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables sphingosine-1-phosphate phosphatase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in sphingosine metabolic process	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in endoplasmic reticulum membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: sphingosine-1-phosphate phosphatase 2

Names: sphingosine 1-phosphate phosphohydrolase 2; sphingosine-1-phosphate phosphotase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072411.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

124677317..124812829

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_526109.9 → XP_526109.2 sphingosine-1-phosphate phosphatase 2

UniProtKB/TrEMBL

A0A2I3SNM7, A0A2J8NFR7, A0A6D2X3V9, H2QJI1

Related

ENSPTRP00000078528.1

Conserved Domains (1) summary

cd03388
Location:84 → 233

PAP2_SPPase1; PAP2_like proteins, sphingosine-1-phosphatase subfamily. Sphingosine-1-phosphatase is an intracellular enzyme located in the endoplasmic reticulum, which regulates the level of sphingosine-1-phosphate (S1P), a bioactive lipid. S1P acts as a second ...