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ACLA_015480 decapping enzyme Dcp2, putative [ Aspergillus clavatus NRRL 1 ]

Gene ID: 4706918, updated on 31-Oct-2024

Summary

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Gene symbol
ACLA_015480
Gene description
decapping enzyme Dcp2, putative
Locus tag
ACLA_015480
See related
FungiDB:ACLA_015480; VEuPathDB:ACLA_015480
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus clavatus NRRL 1 (strain: NRRL 1, type-material: culture from type material of Aspergillus clavatus)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Fumigati
Orthologs
Aspergillus fumigatus all
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Genomic context

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See ACLA_015480 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
2

NW_001517104.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene aminomethyl transferase, putative Neighboring gene cell cycle control protein (Cwf23), putative

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001517104.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus. Fedorova ND, et al. PLoS Genet, 2008 Apr 11. PMID 18404212, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Repeated regions

  • Loc: 1980697-1980721 rpt_type = tandem , rpt_unit_seq = ctgcgtcgggtg , satellite = microsatellite

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables manganese ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in deadenylation-dependent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
decapping enzyme Dcp2, putative
XP_001274532.1
  • encoded by transcript ACLA_015480A
    predicted by EVM2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001517104.1 Reference assembly

    Range
    1977935..1981397
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001274531.1 → XP_001274532.1  decapping enzyme Dcp2, putative [Aspergillus clavatus NRRL 1]

    See identical proteins and their annotated locations for XP_001274532.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A1CBI8
    Conserved Domains (2) summary
    cd03672
    Location:118 → 271
    Dcp2p; mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'->3' mRNA-decay pathways. Dcp2p contains an all-alpha helical ...
    pfam05026
    Location:33 → 115
    DCP2; Dcp2, box A domain
Nucleotide Protein
Heading Accession and Version

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