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ACLA_083570 beta-mannosidase [ Aspergillus clavatus NRRL 1 ]

Gene ID: 4700372, updated on 31-Oct-2024

Summary

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Gene symbol
ACLA_083570
Gene description
beta-mannosidase
Locus tag
ACLA_083570
See related
FungiDB:ACLA_083570; VEuPathDB:ACLA_083570
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus clavatus NRRL 1 (strain: NRRL 1, type-material: culture from type material of Aspergillus clavatus)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Fumigati
Orthologs
Aspergillus fumigatus all
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Genomic context

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See ACLA_083570 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
4

NW_001517093.1Genomic Context describing neighboring genes Neighboring gene sugar isomerase, KpsF/GutQ Neighboring gene ubiquinone biosynthesis methyltransferase Coq5, putative Neighboring gene 2-oxoisovalerate dehydrogenase complex alpha subunit, putative Neighboring gene CCR4-NOT core complex subunit Not4, putative

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001517093.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus. Fedorova ND, et al. PLoS Genet, 2008 Apr 11. PMID 18404212, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-mannosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycoprotein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-mannosidase
XP_001268088.1
  • encoded by transcript ACLA_083570A
    predicted by EVM2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001517093.1 Reference assembly

    Range
    1292247..1295278 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001268087.1 → XP_001268088.1  beta-mannosidase [Aspergillus clavatus NRRL 1]

    See identical proteins and their annotated locations for XP_001268088.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A1CTM5
    Conserved Domains (2) summary
    COG3250
    Location:95 → 736
    LacZ; Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
    pfam00703
    Location:220 → 340
    Glyco_hydro_2; Glycosyl hydrolases family 2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A1CTM5.1

Gene LinkOut

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Molecular Biology Databases
Research Materials