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ACLA_084350 nuclear pore complex subunit, putative [ Aspergillus clavatus NRRL 1 ]

Gene ID: 4699787, updated on 31-Oct-2024

Summary

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Gene symbol
ACLA_084350
Gene description
nuclear pore complex subunit, putative
Locus tag
ACLA_084350
See related
FungiDB:ACLA_084350; VEuPathDB:ACLA_084350
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus clavatus NRRL 1 (strain: NRRL 1, type-material: culture from type material of Aspergillus clavatus)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Fumigati
Orthologs
Aspergillus fumigatus all
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Genomic context

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See ACLA_084350 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
3

NW_001517093.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-like activating enzyme (UlaA), putative Neighboring gene ribose 5-phosphate isomerase A Neighboring gene ATP binding protein, putative Neighboring gene Rpp14 family

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001517093.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus. Fedorova ND, et al. PLoS Genet, 2008 Apr 11. PMID 18404212, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitotic spindle assembly checkpoint signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of bub1-bub3 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in kinetochore IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of mitotic checkpoint complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear pore complex subunit, putative
XP_001268166.1
  • encoded by transcript ACLA_084350A
    predicted by EVM2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001517093.1 Reference assembly

    Range
    1508154..1509335 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001268165.1 → XP_001268166.1  nuclear pore complex subunit, putative [Aspergillus clavatus NRRL 1]

    See identical proteins and their annotated locations for XP_001268166.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A1CTV3
    Conserved Domains (3) summary
    COG2319
    Location:7 → 325
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:16 → 61
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:13 → 318
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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