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PDC phosducin [ Pan troglodytes (chimpanzee) ]

Gene ID: 469614, updated on 17-Aug-2024

Summary

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Official Symbol
PDCprovided by VGNC
Official Full Name
phosducinprovided by VGNC
Primary source
VGNC:VGNC:1440
Locus tag
CK820_G0013511
See related
Ensembl:ENSPTRG00000001785
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See PDC in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (62649209..62655140)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (168694999..168700517, complement)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene PACRG-like protein Neighboring gene uncharacterized LOC134808500 Neighboring gene odr-4 GPCR localization factor homolog Neighboring gene translocated promoter region, nuclear basket protein Neighboring gene U6 spliceosomal RNA Neighboring gene proteoglycan 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in photoreceptor outer segment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosducin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    62649209..62655140
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016934324.3 → XP_016789813.1  phosducin

    UniProtKB/TrEMBL
    A0A2J8N6A7, A0A6D2VV40, H2Q0S8
    Related
    ENSPTRP00000002987.5
    Conserved Domains (1) summary
    pfam02114
    Location:1 → 246
    Phosducin
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials