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CELF3 CUGBP Elav-like family member 3 [ Pan troglodytes (chimpanzee) ]

Gene ID: 469485, updated on 10-Oct-2024

Summary

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Official Symbol
CELF3provided by VGNC
Official Full Name
CUGBP Elav-like family member 3provided by VGNC
Primary source
VGNC:VGNC:8244
Locus tag
CK820_G0047022
See related
Ensembl:ENSPTRG00000001293
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
TNRC4
Orthologs
human mouse all
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Genomic context

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See CELF3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (97488679..97502540)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (133847196..133861057, complement)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene mitochondrial ribosomal protein L9 Neighboring gene regulatory subunit of type II PKA R-subunit domain containing 1 Neighboring gene sorting nexin 27 Neighboring gene U6 spliceosomal RNA Neighboring gene tuftelin 1 Neighboring gene microRNA mir-554

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CUGBP Elav-like family member 3
Names
trinucleotide repeat containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    97488679..97502540
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009431420.3 → XP_009429695.3  CUGBP Elav-like family member 3 isoform X6

  2. XM_016927107.2 → XP_016782596.2  CUGBP Elav-like family member 3 isoform X7

    UniProtKB/TrEMBL
    A0A2I3SJ98

  3. XM_009431411.4 → XP_009429686.2  CUGBP Elav-like family member 3 isoform X3

    UniProtKB/TrEMBL
    A0A2J8JJP5
    Conserved Domains (5) summary
    TIGR01628
    Location:2 → 254
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    PRK14951
    Location:203 → 331
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
    cd12639
    Location:328 → 406
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:47 → 127
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cl17169
    Location:2 → 41
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_054686475.2 → XP_054542450.1  CUGBP Elav-like family member 3 isoform X8

    UniProtKB/TrEMBL
    A0A2J8JJP9

  5. XM_009431396.4 → XP_009429671.3  CUGBP Elav-like family member 3 isoform X1

  6. XM_524868.9 → XP_524868.4  CUGBP Elav-like family member 3 isoform X4

    UniProtKB/TrEMBL
    A0A2I3SSC4, A0A2J8JJQ5, A0A6D2X2G6, H2PZZ4
    Related
    ENSPTRP00000079827.1
    Conserved Domains (3) summary
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:94 → 174
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:325 → 403
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  7. XM_009431417.4 → XP_009429692.3  CUGBP Elav-like family member 3 isoform X5

  8. XM_009431400.5 → XP_009429675.2  CUGBP Elav-like family member 3 isoform X2

    UniProtKB/TrEMBL
    H2PZZ4
    Related
    ENSPTRP00000002208.5
    Conserved Domains (4) summary
    PRK12323
    Location:213 → 350
    PRK12323; DNA polymerase III subunit gamma/tau
    cd12639
    Location:374 → 452
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:93 → 173
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  9. XM_054686493.2 → XP_054542468.1  CUGBP Elav-like family member 3 isoform X6

  10. XM_054686502.2 → XP_054542477.1  CUGBP Elav-like family member 3 isoform X7

    UniProtKB/TrEMBL
    A0A2I3SJ98

  11. XM_054686496.2 → XP_054542471.1  CUGBP Elav-like family member 3 isoform X7

    UniProtKB/TrEMBL
    A0A2I3SJ98

  12. XM_009431432.5 → XP_009429707.2  CUGBP Elav-like family member 3 isoform X6

    UniProtKB/TrEMBL
    A0A2I3TEB0
    Conserved Domains (3) summary
    cd12639
    Location:299 → 377
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:21 → 384
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cd12635
    Location:18 → 98
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
Nucleotide Protein
Heading Accession and Version

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