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WDR3 WD repeat domain 3 [ Pan troglodytes (chimpanzee) ]

Gene ID: 469436, updated on 17-Aug-2024

Summary

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Official Symbol
WDR3provided by VGNC
Official Full Name
WD repeat domain 3provided by VGNC
Primary source
VGNC:VGNC:1640
Locus tag
CK820_G0044278
See related
Ensembl:ENSPTRG00000001168
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See WDR3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (115151615..115182004)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (116167735..116198124, complement)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene voltage-dependent anion-selective channel protein 2-like Neighboring gene small nucleolar RNA SNORA40 Neighboring gene ganglioside induced differentiation associated protein 2 Neighboring gene sperm associated antigen 17 Neighboring gene uncharacterized LOC107967814 Neighboring gene 26S proteasome regulatory subunit 4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Pwp2p-containing subcomplex of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    115151615..115182004
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_524820.6 → XP_524820.3  WD repeat-containing protein 3

    See identical proteins and their annotated locations for XP_524820.3

    UniProtKB/TrEMBL
    A0A2I3SBG1, A0A2J8JUH9, A0A6D2Y896, H2PZS4
    Related
    ENSPTRP00000074316.1
    Conserved Domains (4) summary
    cd00200
    Location:407 → 703
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:462 → 494
    7WD40; WD40 repeat [structural motif]
    pfam04003
    Location:804 → 907
    Utp12; Dip2/Utp12 Family
    cl25539
    Location:47 → 226
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_009428315.5 → XP_009426590.1  WD repeat-containing protein 3

    See identical proteins and their annotated locations for XP_009426590.1

    UniProtKB/TrEMBL
    A0A2I3SBG1, A0A2J8JUH9, A0A6D2Y896, H2PZS4
    Conserved Domains (4) summary
    cd00200
    Location:407 → 703
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:462 → 494
    7WD40; WD40 repeat [structural motif]
    pfam04003
    Location:804 → 907
    Utp12; Dip2/Utp12 Family
    cl25539
    Location:47 → 226
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_009428326.5 → XP_009426601.1  WD repeat-containing protein 3

    See identical proteins and their annotated locations for XP_009426601.1

    UniProtKB/TrEMBL
    A0A2I3SBG1, A0A2J8JUH9, A0A6D2Y896, H2PZS4
    Conserved Domains (4) summary
    cd00200
    Location:407 → 703
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:462 → 494
    7WD40; WD40 repeat [structural motif]
    pfam04003
    Location:804 → 907
    Utp12; Dip2/Utp12 Family
    cl25539
    Location:47 → 226
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  4. XM_009428318.5 → XP_009426593.1  WD repeat-containing protein 3

    See identical proteins and their annotated locations for XP_009426593.1

    UniProtKB/TrEMBL
    A0A2I3SBG1, A0A2J8JUH9, A0A6D2Y896, H2PZS4
    Related
    ENSPTRP00000001997.5
    Conserved Domains (4) summary
    cd00200
    Location:407 → 703
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:462 → 494
    7WD40; WD40 repeat [structural motif]
    pfam04003
    Location:804 → 907
    Utp12; Dip2/Utp12 Family
    cl25539
    Location:47 → 226
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
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