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TNFAIP1 TNF alpha induced protein 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 468380, updated on 17-Aug-2024

Summary

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Official Symbol
TNFAIP1provided by VGNC
Official Full Name
TNF alpha induced protein 1provided by VGNC
Primary source
VGNC:VGNC:9726
Locus tag
CK820_G0028408
See related
Ensembl:ENSPTRG00000008912
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See TNFAIP1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 19 NC_072417.2 (39237557..39248854, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 17 NC_072415.1 (37422014..37433274, complement)

Chromosome 19 - NC_072417.2Genomic Context describing neighboring genes Neighboring gene SEBOX homeobox Neighboring gene transmembrane protein 199 Neighboring gene DNA polymerase delta interacting protein 2 Neighboring gene intraflagellar transport 20 Neighboring gene transmembrane protein 97 Neighboring gene keratin, type I cytoskeletal 18-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of Rho protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein homooligomerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cul3-RING ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2
Names
tumor necrosis factor, alpha-induced protein 1 (endothelial)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072417.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    39237557..39248854 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001147285.7 → XP_001147285.2  BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2 isoform X2

    See identical proteins and their annotated locations for XP_001147285.2

    UniProtKB/TrEMBL
    A0A2J8LHZ9, A0A6D2WY15, H2R9L0
    Related
    ENSPTRP00000052970.2
    Conserved Domains (1) summary
    pfam02214
    Location:30 → 116
    BTB_2; BTB/POZ domain

  2. XM_054670960.2 → XP_054526935.1  BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials