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ATXN7 ataxin 7 [ Pan troglodytes (chimpanzee) ]

Gene ID: 465220, updated on 10-Oct-2024

Summary

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Official Symbol
ATXN7provided by VGNC
Official Full Name
ataxin 7provided by VGNC
Primary source
VGNC:VGNC:1745
Locus tag
CK820_G0004818
See related
Ensembl:ENSPTRG00000015077
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See ATXN7 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 2 NC_086015.1 (67835256..67980585)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 3 NC_072401.1 (67834778..67976624)

Chromosome 2 - NC_086015.1Genomic Context describing neighboring genes Neighboring gene sentan, cilia apical structure protein Neighboring gene uncharacterized LOC134809567 Neighboring gene chromosome 3 C3orf49 homolog Neighboring gene THO complex subunit 7 Neighboring gene proteasome 26S subunit, non-ATPase 6 Neighboring gene small nucleolar RNA U3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
ataxin-7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_086015.1 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    67835256..67980585
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054680746.2 → XP_054536721.1  ataxin-7 isoform X5

    UniProtKB/TrEMBL
    A0A2J8P7B5

  2. XM_054680741.2 → XP_054536716.1  ataxin-7 isoform X1

  3. XM_063806879.1 → XP_063662949.1  ataxin-7 isoform X2

    UniProtKB/TrEMBL
    A0A2J8P7D0

  4. XM_016941443.4 → XP_016796932.2  ataxin-7 isoform X1

    UniProtKB/TrEMBL
    A0A2I3T8Q1
    Conserved Domains (2) summary
    pfam08313
    Location:343 → 403
    SCA7; zinc-binding domain
    cl26464
    Location:413 → 498
    Atrophin-1; Atrophin-1 family

  5. XM_063806881.1 → XP_063662951.1  ataxin-7 isoform X4

  6. XM_063806880.1 → XP_063662950.1  ataxin-7 isoform X3

  7. XM_063806882.1 → XP_063662952.1  ataxin-7 isoform X6

  8. XM_009445773.5 → XP_009444048.2  ataxin-7 isoform X5

    UniProtKB/TrEMBL
    A0A2J8P7B5, H2QMW2
    Conserved Domains (2) summary
    pfam08313
    Location:325 → 385
    SCA7; zinc-binding domain
    cl26464
    Location:395 → 480
    Atrophin-1; Atrophin-1 family

  9. XM_054680748.2 → XP_054536723.1  ataxin-7 isoform X5

    UniProtKB/TrEMBL
    A0A2J8P7B5

  10. XM_016941447.4 → XP_016796936.2  ataxin-7 isoform X1

    UniProtKB/TrEMBL
    A0A2I3T8Q1
    Conserved Domains (2) summary
    pfam08313
    Location:343 → 403
    SCA7; zinc-binding domain
    cl26464
    Location:413 → 498
    Atrophin-1; Atrophin-1 family

  11. XM_063806885.1 → XP_063662955.1  ataxin-7 isoform X12

  12. XM_063806883.1 → XP_063662953.1  ataxin-7 isoform X7

  13. XM_063806884.1 → XP_063662954.1  ataxin-7 isoform X11

  14. XM_001174609.7 → XP_001174609.1  ataxin-7 isoform X13

    UniProtKB/TrEMBL
    A0A2I3TNP1, A0A2J8P7D1, A0A6D2X3N3, H2QMW2
    Related
    ENSPTRP00000090845.1
    Conserved Domains (2) summary
    pfam08313
    Location:188 → 248
    SCA7; SCA7, zinc-binding domain
    cl26464
    Location:258 → 343
    Atrophin-1; Atrophin-1 family

  15. XM_009445776.5 → XP_009444051.1  ataxin-7 isoform X8

    UniProtKB/TrEMBL
    A0A2I3RZP9
    Conserved Domains (1) summary
    pfam08313
    Location:188 → 247
    SCA7; SCA7, zinc-binding domain

  16. XM_016941451.4 → XP_016796940.1  ataxin-7 isoform X9

    UniProtKB/TrEMBL
    A0A2I3RZP9

  17. XM_054680750.2 → XP_054536725.1  ataxin-7 isoform X10

RNA

  1. XR_010155625.1 RNA Sequence

  2. XR_010155626.1 RNA Sequence

  3. XR_010155627.1 RNA Sequence

Nucleotide Protein
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