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TGS1 trimethylguanosine synthase 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 464182, updated on 10-Oct-2024

Summary

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Official Symbol
TGS1provided by VGNC
Official Full Name
trimethylguanosine synthase 1provided by VGNC
Primary source
VGNC:VGNC:785
Locus tag
CK820_G0032855
See related
Ensembl:ENSPTRG00000020262
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
NCOA6IP
Orthologs
human mouse all
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Genomic context

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See TGS1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 7 NC_072405.2 (64364680..64418897)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 8 NC_072406.1 (69285924..69340531)

Chromosome 7 - NC_072405.2Genomic Context describing neighboring genes Neighboring gene XK related 4 Neighboring gene myotubularin-related protein 5-like Neighboring gene transmembrane protein 68 Neighboring gene U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like Neighboring gene small nucleolar RNA SNORA1 Neighboring gene LYN proto-oncogene, Src family tyrosine kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA cap trimethylguanosine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 7-methylguanosine RNA capping IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in 7-methylguanosine cap hypermethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trimethylguanosine synthase
Names
PRIP-interacting protein PIPMT
trimethylguanosine synthase homolog
XP_016814979.3
XP_016814981.3
XP_016814982.3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072405.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    64364680..64418897
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016959490.4 → XP_016814979.3  trimethylguanosine synthase isoform X1

    UniProtKB/TrEMBL
    H2QW66

  2. XM_016959492.4 → XP_016814981.3  trimethylguanosine synthase isoform X2

  3. XM_016959493.4 → XP_016814982.3  trimethylguanosine synthase isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials