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CROT carnitine O-octanoyltransferase [ Pan troglodytes (chimpanzee) ]

Gene ID: 463514, updated on 10-Oct-2024

Summary

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Official Symbol
CROTprovided by VGNC
Official Full Name
carnitine O-octanoyltransferaseprovided by VGNC
Primary source
VGNC:VGNC:4323
Locus tag
CK820_G0029092
See related
Ensembl:ENSPTRG00000019367
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See CROT in Genome Data Viewer
Location:
chromosome: 6
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 6 NC_072404.2 (96718173..96772410)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 7 NC_072405.1 (93065881..93120026)

Chromosome 6 - NC_072404.2Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2 Neighboring gene transmembrane protein 243 Neighboring gene uncharacterized LOC746222 Neighboring gene uncharacterized LOC112209790 Neighboring gene ATP binding cassette subfamily B member 4 Neighboring gene ATP binding cassette subfamily B member 1 Neighboring gene small nucleolar RNA U13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carnitine O-octanoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisomal carnitine O-octanoyltransferase
XP_016813159.1
XP_016813160.1
XP_054511884.1
XP_519181.2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072404.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    96718173..96772410
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_519181.6 → XP_519181.2  peroxisomal carnitine O-octanoyltransferase isoform X1

    See identical proteins and their annotated locations for XP_519181.2

    UniProtKB/TrEMBL
    A0A2I3SC27, A0A2J8LGJ1, A0A2J8LGK5, A0A6D2XW02, A0A6D2Y6I2, K7BSL4
    Related
    ENSPTRP00000089145.1
    Conserved Domains (1) summary
    pfam00755
    Location:20 → 594
    Carn_acyltransf; Choline/Carnitine o-acyltransferase

  2. XM_016957670.3 → XP_016813159.1  peroxisomal carnitine O-octanoyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A2I3SC27, A0A2J8LGJ1, A0A6D2Y6I2
    Related
    ENSPTRP00000074598.1

  3. XM_054655909.2 → XP_054511884.1  peroxisomal carnitine O-octanoyltransferase isoform X3

  4. XM_016957671.3 → XP_016813160.1  peroxisomal carnitine O-octanoyltransferase isoform X4

    UniProtKB/TrEMBL
    A0A2I3SC27, A0A2J8LGI3, A0A2J8LGJ1, A0A6D2XVQ5, A0A6D2Y6I2, H2QUV6
    Related
    ENSPTRP00000033128.3
    Conserved Domains (1) summary
    pfam00755
    Location:20 → 622
    Carn_acyltransf; Choline/Carnitine o-acyltransferase
Nucleotide Protein
Heading Accession and Version

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