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CLIP2 CAP-Gly domain containing linker protein 2 [ Pan troglodytes (chimpanzee) ]

Gene ID: 463470, updated on 10-Oct-2024

Summary

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Official Symbol
CLIP2provided by VGNC
Official Full Name
CAP-Gly domain containing linker protein 2provided by VGNC
Primary source
VGNC:VGNC:7367
Locus tag
CK820_G0040827
See related
Ensembl:ENSPTRG00000019290 Ensembl:ENSPTRG00000050476
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
CYLN2
Orthologs
human mouse all
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Genomic context

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See CLIP2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 6 NC_072404.2 (82025535..82139873, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 7 NC_072405.1 (78374076..78488418, complement)

Chromosome 6 - NC_072404.2Genomic Context describing neighboring genes Neighboring gene general transcription factor IIi Neighboring gene uncharacterized LOC129135511 Neighboring gene GTF2I repeat domain containing 1 Neighboring gene uncharacterized LOC100609507 Neighboring gene uncharacterized LOC134810450 Neighboring gene uncharacterized LOC107975853

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables microtubule plus-end binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic microtubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell cortex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule plus-end IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CAP-Gly domain-containing linker protein 2
Names
cytoplasmic linker 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072404.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    82025535..82139873 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_531035.7 → XP_531035.2  CAP-Gly domain-containing linker protein 2 isoform X3

    See identical proteins and their annotated locations for XP_531035.2

    UniProtKB/TrEMBL
    A0A2J8Q873, A0A6D2Y0P7, K7AL62, K7C5D8
    Related
    ENSPTRP00000063041.1
    Conserved Domains (2) summary
    pfam01302
    Location:221 → 285
    CAP_GLY; CAP-Gly domain
    cl25732
    Location:357 → 987
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_001150007.6 → XP_001150007.1  CAP-Gly domain-containing linker protein 2 isoform X1

    See identical proteins and their annotated locations for XP_001150007.1

    UniProtKB/TrEMBL
    A0A2J8Q870, A0A6D2XAB5, H2QUR3, K7CN07
    Related
    ENSPTRP00000032990.5
    Conserved Domains (2) summary
    pfam01302
    Location:221 → 285
    CAP_GLY; CAP-Gly domain
    cl25732
    Location:357 → 1016
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_054655783.2 → XP_054511758.1  CAP-Gly domain-containing linker protein 2 isoform X4

  4. XM_009453299.5 → XP_009451574.1  CAP-Gly domain-containing linker protein 2 isoform X2

    UniProtKB/TrEMBL
    K7CN07
    Conserved Domains (2) summary
    COG1196
    Location:357 → 1016
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam01302
    Location:222 → 285
    CAP_GLY; CAP-Gly domain
Nucleotide Protein
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