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TENT5A terminal nucleotidyltransferase 5A [ Pan troglodytes (chimpanzee) ]

Gene ID: 462847, updated on 17-Aug-2024

Summary

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Official Symbol
TENT5Aprovided by VGNC
Official Full Name
terminal nucleotidyltransferase 5Aprovided by VGNC
Primary source
VGNC:VGNC:12634
Locus tag
CK820_G0000877
See related
Ensembl:ENSPTRG00000047338
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
FAM46A
Orthologs
human mouse all
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Genomic context

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See TENT5A in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 5 NC_072403.2 (93750964..93758062, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 6 NC_072404.1 (93749448..93756954, complement)

Chromosome 5 - NC_072403.2Genomic Context describing neighboring genes Neighboring gene branched chain keto acid dehydrogenase E1 subunit beta Neighboring gene large ribosomal subunit protein uL22-like Neighboring gene citrate synthase, mitochondrial-like Neighboring gene small nucleolar RNA SNORA70 Neighboring gene uncharacterized LOC104006897

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A) RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA stabilization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
terminal nucleotidyltransferase 5A
Names
family with sequence similarity 46 member A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072403.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    93750964..93758062 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001148042.5 → XP_001148042.2  terminal nucleotidyltransferase 5A isoform X2

    See identical proteins and their annotated locations for XP_001148042.2

    UniProtKB/TrEMBL
    A0A2J8PVN2
    Conserved Domains (1) summary
    pfam07984
    Location:95 → 412
    NTP_transf_7; Nucleotidyltransferase

  2. XM_001147967.7 → XP_001147967.1  terminal nucleotidyltransferase 5A isoform X3

    See identical proteins and their annotated locations for XP_001147967.1

    UniProtKB/TrEMBL
    A0A2I3RLJ1, A0A2J8PVN6, A0A6D2WLZ9
    Conserved Domains (1) summary
    pfam07984
    Location:76 → 392
    NTP_transf_7; Nucleotidyltransferase

  3. XM_518605.9 → XP_518605.4  terminal nucleotidyltransferase 5A isoform X1

    UniProtKB/TrEMBL
    A0A2J8PVP2
    Conserved Domains (1) summary
    pfam07984
    Location:157 → 474
    NTP_transf_7; Nucleotidyltransferase

  4. XM_009451594.5 → XP_009449869.1  terminal nucleotidyltransferase 5A isoform X3

    See identical proteins and their annotated locations for XP_009449869.1

    UniProtKB/TrEMBL
    A0A2I3RLJ1, A0A2J8PVN6, A0A6D2WLZ9
    Related
    ENSPTRP00000065570.1
    Conserved Domains (1) summary
    pfam07984
    Location:76 → 392
    NTP_transf_7; Nucleotidyltransferase
Nucleotide Protein
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